NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1002651

Scaffold Ga0208975_1002651


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1002651 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7026
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023585Metagenome209Y
F023833Metagenome208Y
F033350Metagenome177N
F100669Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100265118F100669AGGGGGMTKGICDLRKFLHKAQVRLTEAGLLIIGYLRKTEARVRGINKLEDSYNAKYTQNRFR
Ga0208975_10026512F023833AGGAMKSHSELIQDIIDDAMSKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLSDE
Ga0208975_10026513F033350GGAGGMSVDVDVPKLKWSMLEWKSPEEKPKNDEKVLMDIGGEVCVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0208975_10026515F023585AGGAMSVKRLKLVDEFHAIVSKRLRDLFKDFDHSKRENYKDIINHLDYSHRITKELLERAKKYQKIDMEKAKK

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