Scaffold Ga0208975_1002651

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1002651
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7026
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100265118	F100669	AGGGGG	MTKGICDLRKFLHKAQVRLTEAGLLIIGYLRKTEARVRGINKLEDSYNAKYTQNRFR
Ga0208975_10026512	F023833	AGGA	MKSHSELIQDIIDDAMSKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLSDE
Ga0208975_10026513	F033350	GGAGG	MSVDVDVPKLKWSMLEWKSPEEKPKNDEKVLMDIGGEVCVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0208975_10026515	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLRDLFKDFDHSKRENYKDIINHLDYSHRITKELLERAKKYQKIDMEKAKK