Scaffold Ga0208975_1001615

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1001615
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9358
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (24.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028738	Metagenome / Metatranscriptome	190	N
F036603	Metagenome	169	N
F042894	Metagenome	157	N
F105180	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100161514	F042894	N/A	MSPDMLASPAHVIRGLSYQIAYSRDRVLQGDWTEKYARQRIAMCAAVAEENLRESHNCMAVSIYANLTTGCRALFTWTYVDRNGEKDSGSVHPTMDGR
Ga0208975_100161517	F036603	GAG	MMWATVALVVCAGMAAVSVAYISDLILSSFANSSTMALLITDAGNVSSDDANLERQLTSATMGLKACRDLGWALAVGCLGVGVAVFLRFRRANAS
Ga0208975_100161522	F105180	N/A	MSYLILFLTGLLIGFVAGVLVYHKNGDRLKETEAKGKNLLDALKGK
Ga0208975_10016158	F028738	AGGAGG	VTTSTTHGTGQPINVILTDHTIVLMWIVKTEAIRQFSISDMSQAEVELADFEAVILAKQAKHLPTFAGATFELNGNAYVIDAVSQSAADVIQRQSIHLKKIWVSARSFFPA