NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105180

Metagenome / Metatranscriptome Family F105180

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105180
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 45 residues
Representative Sequence MSYLILFTTGLLIGFVAGLLVYRKHSDRLKSTEDKGKSILDALKGR
Number of Associated Samples 72
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 21.00 %
% of genes from short scaffolds (< 2000 bps) 64.00 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (66.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine
(15.000 % of family members)
Environment Ontology (ENVO) Unclassified
(41.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(59.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 58.11%    β-sheet: 0.00%    Coil/Unstructured: 41.89%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01464SLT 5.00
PF05876GpA_ATPase 3.00
PF13481AAA_25 1.00
PF01343Peptidase_S49 1.00
PF13444Acetyltransf_5 1.00
PF04404ERF 1.00
PF12684DUF3799 1.00
PF04275P-mevalo_kinase 1.00
PF11651P22_CoatProtein 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG5525Phage terminase, large subunit GpAMobilome: prophages, transposons [X] 3.00
COG0616Periplasmic serine protease, ClpP classPosttranslational modification, protein turnover, chaperones [O] 2.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.00 %
All OrganismsrootAll Organisms34.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000756|JGI12421J11937_10000292All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage19020Open in IMG/M
3300000756|JGI12421J11937_10047625Not Available1413Open in IMG/M
3300000882|FwDRAFT_10044720All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3828Open in IMG/M
3300003277|JGI25908J49247_10002486All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5878Open in IMG/M
3300003277|JGI25908J49247_10027533Not Available1634Open in IMG/M
3300003394|JGI25907J50239_1059976Not Available763Open in IMG/M
3300005580|Ga0049083_10046302Not Available1540Open in IMG/M
3300005581|Ga0049081_10002158All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7408Open in IMG/M
3300005581|Ga0049081_10031206Not Available2025Open in IMG/M
3300005584|Ga0049082_10281186Not Available558Open in IMG/M
3300006484|Ga0070744_10028147Not Available1665Open in IMG/M
3300006805|Ga0075464_10195060Not Available1202Open in IMG/M
3300006805|Ga0075464_10639474All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage656Open in IMG/M
3300007544|Ga0102861_1014012All Organisms → Viruses → Predicted Viral1950Open in IMG/M
3300007544|Ga0102861_1019185Not Available1690Open in IMG/M
3300007544|Ga0102861_1099067Not Available778Open in IMG/M
3300007545|Ga0102873_1000144All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage28213Open in IMG/M
3300007600|Ga0102920_1006089All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3376Open in IMG/M
3300007670|Ga0102862_1208151Not Available508Open in IMG/M
3300007972|Ga0105745_1095048Not Available871Open in IMG/M
3300007974|Ga0105747_1117427Not Available841Open in IMG/M
3300007974|Ga0105747_1232592Not Available613Open in IMG/M
3300008055|Ga0108970_11290904All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2723Open in IMG/M
3300008267|Ga0114364_1014667Not Available8166Open in IMG/M
3300008267|Ga0114364_1014671All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3440Open in IMG/M
3300008267|Ga0114364_1016952All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5552Open in IMG/M
3300008267|Ga0114364_1036279Not Available1880Open in IMG/M
3300008267|Ga0114364_1063003All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → Methylotenera oryzisoli1278Open in IMG/M
3300008450|Ga0114880_1129733Not Available935Open in IMG/M
3300008450|Ga0114880_1135105Not Available908Open in IMG/M
3300008996|Ga0102831_1011460All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3117Open in IMG/M
3300008999|Ga0102816_1313185Not Available501Open in IMG/M
3300009051|Ga0102864_1048851Not Available1144Open in IMG/M
3300009057|Ga0102892_1037053All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage914Open in IMG/M
3300009068|Ga0114973_10338400Not Available796Open in IMG/M
3300009152|Ga0114980_10002043Not Available14398Open in IMG/M
3300009155|Ga0114968_10141466Not Available1434Open in IMG/M
3300009181|Ga0114969_10743247Not Available525Open in IMG/M
3300009183|Ga0114974_10039394All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3218Open in IMG/M
3300009419|Ga0114982_1004012All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5905Open in IMG/M
3300010388|Ga0136551_1037526Not Available901Open in IMG/M
3300010885|Ga0133913_10655636All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2751Open in IMG/M
3300010885|Ga0133913_11363374Not Available1807Open in IMG/M
3300010885|Ga0133913_12125210Not Available1388Open in IMG/M
3300011337|Ga0153702_1396All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage15069Open in IMG/M
3300012012|Ga0153799_1025734Not Available1155Open in IMG/M
3300012012|Ga0153799_1073338Not Available617Open in IMG/M
3300012665|Ga0157210_1000365All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage20431Open in IMG/M
3300012665|Ga0157210_1033439Not Available802Open in IMG/M
3300012666|Ga0157498_1015713Not Available1189Open in IMG/M
3300013372|Ga0177922_10084727Not Available969Open in IMG/M
3300013372|Ga0177922_10484930Not Available760Open in IMG/M
3300017780|Ga0181346_1277351Not Available576Open in IMG/M
3300017784|Ga0181348_1059075Not Available1555Open in IMG/M
3300019784|Ga0181359_1011383All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3195Open in IMG/M
3300019784|Ga0181359_1034853Not Available1948Open in IMG/M
3300019784|Ga0181359_1055503All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1524Open in IMG/M
3300020151|Ga0211736_10000125Not Available2336Open in IMG/M
3300020151|Ga0211736_10530327Not Available698Open in IMG/M
3300020159|Ga0211734_10013582Not Available509Open in IMG/M
3300020172|Ga0211729_10213555Not Available2619Open in IMG/M
3300020205|Ga0211731_10485154All Organisms → Viruses → Predicted Viral2847Open in IMG/M
3300021519|Ga0194048_10173731All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage803Open in IMG/M
3300021963|Ga0222712_10008525All Organisms → cellular organisms → Bacteria9666Open in IMG/M
3300022190|Ga0181354_1076057Not Available1111Open in IMG/M
3300024343|Ga0244777_10000395All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage34563Open in IMG/M
3300024346|Ga0244775_10154252Not Available1938Open in IMG/M
3300024346|Ga0244775_10363014Not Available1194Open in IMG/M
3300025763|Ga0255250_1081676Not Available703Open in IMG/M
3300026429|Ga0255253_1043070Not Available728Open in IMG/M
3300026454|Ga0256319_1042292Not Available899Open in IMG/M
3300027205|Ga0208926_1003851Not Available2189Open in IMG/M
3300027205|Ga0208926_1069022Not Available515Open in IMG/M
3300027224|Ga0208164_1087615Not Available528Open in IMG/M
3300027259|Ga0208178_1100044Not Available510Open in IMG/M
3300027608|Ga0208974_1000812All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage12507Open in IMG/M
3300027608|Ga0208974_1011437All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2876Open in IMG/M
3300027608|Ga0208974_1153869Not Available581Open in IMG/M
3300027608|Ga0208974_1163181Not Available558Open in IMG/M
3300027631|Ga0208133_1018121Not Available1834Open in IMG/M
3300027659|Ga0208975_1001615All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage9358Open in IMG/M
3300027697|Ga0209033_1059701Not Available1342Open in IMG/M
3300027710|Ga0209599_10000378All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes29785Open in IMG/M
3300027732|Ga0209442_1144343Not Available922Open in IMG/M
3300027732|Ga0209442_1173594Not Available814Open in IMG/M
3300027733|Ga0209297_1003377All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage8535Open in IMG/M
3300027797|Ga0209107_10003102Not Available9192Open in IMG/M
3300027797|Ga0209107_10015957All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4285Open in IMG/M
3300027900|Ga0209253_10059890Not Available3150Open in IMG/M
3300028025|Ga0247723_1008221All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4338Open in IMG/M
3300028025|Ga0247723_1008913All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4073Open in IMG/M
3300031707|Ga0315291_10783436Not Available833Open in IMG/M
3300031873|Ga0315297_11719335Not Available502Open in IMG/M
3300031885|Ga0315285_10108427All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2404Open in IMG/M
3300031997|Ga0315278_11793277Not Available580Open in IMG/M
3300032053|Ga0315284_10711521Not Available1178Open in IMG/M
3300033996|Ga0334979_0220159Not Available1110Open in IMG/M
3300034102|Ga0335029_0165958Not Available1498Open in IMG/M
3300034105|Ga0335035_0479995Not Available685Open in IMG/M
3300034110|Ga0335055_0070008Not Available1613Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine15.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake12.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic9.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake9.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton5.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment5.00%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment4.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine4.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater3.00%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater3.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water3.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous2.00%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface2.00%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment2.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.00%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater1.00%
Freshwater, Surface IceEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice1.00%
Freshwater And MarineEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine1.00%
Pond Fresh WaterEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water1.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.00%
EstuaryHost-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300000882Freshwater microbial communities from the Columbia RiverEnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300007544Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3EnvironmentalOpen in IMG/M
3300007545Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3EnvironmentalOpen in IMG/M
3300007600Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3EnvironmentalOpen in IMG/M
3300007670Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3EnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300008055Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393Host-AssociatedOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009051Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02EnvironmentalOpen in IMG/M
3300009057Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009419Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FTEnvironmentalOpen in IMG/M
3300010388Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015EnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300011337Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - IlsanEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012665Freshwater microbial communities from Talbot River, Ontario, Canada - S11EnvironmentalOpen in IMG/M
3300012666Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2EnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300021519Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5mEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025763Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026429Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026454Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027205Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027224Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027259Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027631Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027697Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027733Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027797Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031885Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034110Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_1000029263300000756Freshwater And SedimentMSYIFTFLTGLLIGVLGGILVYRKNGDRLKETEAKGKSILDAIRGK*
JGI12421J11937_1004762523300000756Freshwater And SedimentMSYLILFLTGLLIGFVAGLLVYRRHSDRLKSTETKGKNLLDALKGK*
FwDRAFT_1004472023300000882Freshwater And MarineMSYLILFTTGLLIGVVAGILVYRKNGDRLKETETKGKNLLDALKGK*
JGI25908J49247_10002486113300003277Freshwater LakeMSYLILFLTGLLIGFVAGLLVYRRHSDRLKSTEDKGKTIIDALKGR*
JGI25908J49247_1002753343300003277Freshwater LakeMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDALKGK*
JGI25907J50239_105997623300003394Freshwater LakeMSYLILFLTGLLIGFVAGLLVYRRHSDRLKSTEDKGKTIIDALKGR*P*
Ga0049083_1004630233300005580Freshwater LenticMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETETKGKHLLDALKGK*
Ga0049081_1000215863300005581Freshwater LenticMSYLILFLTGLLIGAVAGLLIYRKHAASLKASEDKGKSILDALKGR*
Ga0049081_1003120653300005581Freshwater LenticMSYLILFLTGLLIGFVAGVLVYHKNGDRLKETEAKGKNLLDALKGK*
Ga0049082_1028118633300005584Freshwater LenticMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETETKGK
Ga0070744_1002814713300006484EstuarineMSYAILFITGLLIGFVAGVLVYRKNGDRLKETETKGKHLLDALKGK*
Ga0075464_1019506033300006805AqueousMSYAILFLTGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDALKGK*
Ga0075464_1063947423300006805AqueousMFIALLFLTGLLIGFVAGLLVYRKHLDKLKAAEGKGKTILDALKGK*
Ga0102861_101401213300007544EstuarineMSYLILFLTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSIIDALKGR*
Ga0102861_101918513300007544EstuarineLLIGVVAGILVYRKNGDRLKDTEAKGKNLLDALQGK*
Ga0102861_109906723300007544EstuarineMSYLILFLTGLLIGVVAGILVYRKNGDRLKETEAKGKNLLDALKGK*
Ga0102873_1000144383300007545EstuarineMSYAILFIIGLLIGFTAGLLVYRKHIDKLKAAEGKGKSILDALKGK*
Ga0102920_100608913300007600EstuarineRVTPLFPFPNMSYAILFIIGLLIGFTAGLLVYRKHIDKLKAAEGKGKSILDALKGK*
Ga0102862_120815113300007670EstuarineLTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSIIDALKGR*
Ga0105745_109504823300007972Estuary WaterMSYLILFTTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSILDALKGR*
Ga0105747_111742733300007974Estuary WaterMSYLILFLTGLLIGVVAGLLVYRKHSDRIKSTEDKGKSIIDALKGR*
Ga0105747_123259223300007974Estuary WaterMSYLILFLTGLLIGVVAGILVYRKNGDRLKETETKGKHLLDALKGK*
Ga0108970_1129090423300008055EstuaryMSYLILFLTGLLIGFVAGLLVYRKHTDRLKETETKGKNLLDALKGK*
Ga0114364_101466773300008267Freshwater, PlanktonMITSFLTGLVLGVIAGLLISRKNRSKLEAAEAKGKTILDALKGK*
Ga0114364_101467143300008267Freshwater, PlanktonMSYLILFITGLLIGFVAGLLVYRKHSDRLKSTEDKGKTIIDALKGR*
Ga0114364_101695223300008267Freshwater, PlanktonMLSLILFVTGLLIGLVAGLLIYRKHLDKLKAAEAKGKSIVDALKGR*
Ga0114364_103627953300008267Freshwater, PlanktonMLSLILFVTGLLIGLVAGLLIYRKHIEKLKAAEAKGKTIVDALKGR*
Ga0114364_106300333300008267Freshwater, PlanktonMLSLILFVTGLLIGLIAGLLIYRKHIEKLKAAEAKGKTIVDALKGR*
Ga0114880_112973323300008450Freshwater LakeMLSLILFVAGLLIGLVAGLLIYRKHIEKLKAAEAKGKTIVDALKGR*
Ga0114880_113510523300008450Freshwater LakeSLILFVTGLLIGLVAGLLIYRKHIEKLKAAEAKGKTIVDALKGR*
Ga0102831_101146053300008996EstuarineMSDLFLFLPGLLIGFVAGLLVYRKHTDRLKSTEDKGKSIIDALKGR*
Ga0102816_131318523300008999EstuarineMSYAILFITGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDALKGK*
Ga0102864_104885133300009051EstuarineMSYLILFTTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSIIDALKGR*
Ga0102892_103705313300009057EstuarineSPSSPPRVTPLFPFPNMSYAILFIIGLLIGFTAGLLVYRKHIDKLRAAEGKGKSILDALKGK*
Ga0114973_1033840023300009068Freshwater LakeMSYLILFLTGLLIGFVAGVLVYRKNADRLKETETKGKHLLDALKGK*
Ga0114980_1000204393300009152Freshwater LakeMTYAILFITGLLIGFVAGLLVYRKHSDRLKSTEDKGKTILDALKGR*
Ga0114968_1014146613300009155Freshwater LakeMSYLILFLTGLLIGFVAGILVYRKNGDRLKETETKGKHLLDALKGK*
Ga0114969_1074324723300009181Freshwater LakeMAYLYTFLTALLIGFVAGALVFRNNADKLKATETKGKN
Ga0114974_1003939453300009183Freshwater LakeMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETEAKGKHLLDALKGK*
Ga0114982_100401283300009419Deep SubsurfaceMYIALLFLTGLLIGFVAGLLVYRKHLDKLKAAEGKGKTILDALKGK*
Ga0136551_103752623300010388Pond Fresh WaterMSYVYTFLTGLLIGVLGGLLIYRKHLDKLKAAEAKGKSIVDALKGR*
Ga0133913_1065563613300010885Freshwater LakeMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETEAKGKNLLDALKGK*
Ga0133913_1136337413300010885Freshwater LakeMSYLILFTTGLLIGFVAGLLVYRKHSDRLKSTEDKGKSILDALKGR*
Ga0133913_1212521033300010885Freshwater LakeMSYLILFTTGLLIGFVAGALVFRNNADKLKATETKGKNLLDALKGK*
Ga0153702_1396263300011337FreshwaterMLHIILFVTGLLIGLVAGLLIYRKHLDKLKATEAKAKSIVDALKGR*
Ga0153799_102573433300012012FreshwaterMSYAILFTTGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDALKGK*
Ga0153799_107333813300012012FreshwaterMSYLILFLTGLLIGFVAGLLVYRRHSDRLKETETKGKNLLDALKGK*
Ga0157210_100036523300012665FreshwaterMSYVYTFLTGLLIGILAGLLIYRKHLDKLKAAEAKGKTIVDALKGR*
Ga0157210_103343933300012665FreshwaterMLPLILFVTGLLIGLIAGLLIYRKHIEKLKAAEAKGKTIVDALKGR*
Ga0157498_101571333300012666Freshwater, Surface IceMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETEAKGKHLIDALKGK*
Ga0177922_1008472713300013372FreshwaterMSYLILFTTGLLIGFVAGLLVYRRHSDRLKSTEDKGKHL
Ga0177922_1048493013300013372FreshwaterMSYLILFTTGLLIGFVAGLLVYRRHSDRLKETETKGKHLLDALKGK*
Ga0181346_127735133300017780Freshwater LakeMSYLILFLTGLLIGFVAGLLVYRRHSDRLKSTEDK
Ga0181348_105907513300017784Freshwater LakeMSYLILFLTGLLIGFVAGLLVYRRHSDRLKSTEDKG
Ga0181359_101138363300019784Freshwater LakeMLSLILFVTGLLIGLVAGLLIYRKHIEKLKAAEAKGKTIVDALKGR
Ga0181359_103485313300019784Freshwater LakeMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDALKGK
Ga0181359_105550343300019784Freshwater LakeMSYLILFLTGLLIGFVAGLLVYRRHSDRLKSTEDKGKTIIDALKGR
Ga0211736_1000012523300020151FreshwaterMITSFLTGLVLGVIAGLLISRKNRSKLEAAEAKGKTILDALKGK
Ga0211736_1053032733300020151FreshwaterMSYLILFLTGLLIGFVAGLLVYRKHAASLKSTEDKGKHLIDALKGR
Ga0211734_1001358223300020159FreshwaterMSYLILFTTGLLIGIAAGLLIYRKHAASLKATEDKGKTILDALKGR
Ga0211729_1021355543300020172FreshwaterMSYLILFVTGLLIGVAAGLLIYRKHSDRLKATEDKGKSILDALKGR
Ga0211731_1048515433300020205FreshwaterMSYLILFVTGLLIGVAAGLLIYRKHAASLKSTEDKGKSILDALKGR
Ga0194048_1017373123300021519Anoxic Zone FreshwaterMSYLILFTTGLLIGFVAGLLVYRKHLDKLKAAEGKGKSILDALKGK
Ga0222712_10008525123300021963Estuarine WaterMSYLILFTTGLLIGVVAGILVYRKNGEKLKATEAKGKSIIDALKGR
Ga0181354_107605723300022190Freshwater LakeMSYLILFLTGLLIGFVAGLLVYRRHSDRLKSTETKGKNLLDALKGK
Ga0244777_10000395153300024343EstuarineMSYAILFIIGLLIGFTAGLLVYRKHIDKLKAAEGKGKSILDALKGK
Ga0244775_1015425243300024346EstuarineMSYAILFITGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDALKGK
Ga0244775_1036301423300024346EstuarineMSYLILFLTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSIIDALKGR
Ga0255250_108167633300025763FreshwaterMLSLILFVTGLLIGLVAGLLIYRKHIEKLKAAEAKGKSIVDALKGR
Ga0255253_104307023300026429FreshwaterSLILFVTGLLIGLVAGLLIYRKHIEKLKAAEAKGKTIVDALKGR
Ga0256319_104229233300026454FreshwaterMLSLILFVTGLLIGLVAGLLIYRKHLDKLKAAEAKGKSIVDALKGR
Ga0208926_100385143300027205EstuarineMSYLILFTTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSILDALKGR
Ga0208926_106902213300027205EstuarineMSYLILFLTGLLIGVVAGILVYRKNGDRLKETEAKGKNLLDALKGK
Ga0208164_108761513300027224EstuarineRNTMSYLILFLTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSIIDALKGR
Ga0208178_110004413300027259EstuarineFPNMSYAILFIIGLLIGFTAGLLVYRKHIDKLKAAEGKGKSILDALKGK
Ga0208974_1000812123300027608Freshwater LenticMSYLILFLTGLLIGAVAGLLIYRKHAASLKASEDKGKSILDALKGR
Ga0208974_101143763300027608Freshwater LenticMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDA
Ga0208974_115386913300027608Freshwater LenticILFVTGLLIGLVAGLLIYRKHIEKLKAAEAKGKTIVDALKGR
Ga0208974_116318123300027608Freshwater LenticLFLTGLLIGFVAGVLVYRKNGDRLKETETKGKNLLDALKGK
Ga0208133_101812143300027631EstuarineMSYAILFITGLLIGFVAGVLVYRKNGDRLKETETKGKHLLDALKGK
Ga0208975_1001615223300027659Freshwater LenticMSYLILFLTGLLIGFVAGVLVYHKNGDRLKETEAKGKNLLDALKGK
Ga0209033_105970133300027697Freshwater LakeMLSLILFVTGLLIGLVAGLLIYRKHIEKLKAAEAKGKTIVDALKSR
Ga0209599_10000378343300027710Deep SubsurfaceMYIALLFLTGLLIGFVAGLLVYRKHLDKLKAAEGKGKTILDALKGK
Ga0209442_114434313300027732Freshwater LakeMSYLILFLTGLLIGFVAGVLVYRKNGDRLKETETKGKNL
Ga0209442_117359413300027732Freshwater LakeYLILFLTGLLIGFVAGLLVYRRHSDRLKSTEDKGKTIIDALKGR
Ga0209297_1003377163300027733Freshwater LakeMTYAILFITGLLIGFVAGLLVYRKHSDRLKSTEDKGKTILDALKGR
Ga0209107_10003102243300027797Freshwater And SedimentMSYIFTFLTGLLIGVLGGILVYRKNGDRLKETEAKGKSILDAIRGK
Ga0209107_10015957133300027797Freshwater And SedimentMFYLILFTTGLLIGVAAGLLIYRKHSDRLKSTEDKGKSILDALKGR
Ga0209253_1005989023300027900Freshwater Lake SedimentMSYLILFTTGLLIGFVAGLLVYRKHSDRLKSTEDKGKTIIDALKGR
Ga0247723_100822193300028025Deep Subsurface SedimentMFIALLFLTGLLIGFVAGLLVYRKHLDKLKAAEGKGKSILDALKGK
Ga0247723_100891333300028025Deep Subsurface SedimentMYIALLFLTGLLIGFVAGLLVYRKHIEKLKAAEGKGKTILDALKGK
Ga0315291_1078343623300031707SedimentMSYLILFTTGLLIGVVAGILVYRKNGEKLKATEAKGKNLLDALKGK
Ga0315297_1171933523300031873SedimentFTTGLLIGVVAGILVYRKNGEKLKATEAKGKNLLDALKGK
Ga0315285_1010842733300031885SedimentMAYLILFTTGLLIGVVAGILVYRKNGEKLKATEAKGKNLLDALKGK
Ga0315278_1179327723300031997SedimentPITMAYLILFTTGLLIGVVAGILVYRKNGEKLKATEAKGKNLLDALKGK
Ga0315284_1071152133300032053SedimentMSYLILFTTGLLIGVVAGILVYRKNGEKLKATEAK
Ga0334979_0220159_794_9343300033996FreshwaterMSYAIVFITALLIGFTAGLLVYRKHLEKLKAAEGKGKTILDALKGK
Ga0335029_0165958_502_6423300034102FreshwaterMSYLILFLTGLLIGFVAGLLVYRKHSDRLKSTEDKGKSIIDALKGR
Ga0335035_0479995_59_1993300034105FreshwaterMSYLILFTTGLLIGFVAGVLVYRKNGDRLKETEDKGKNLLDALKGK
Ga0335055_0070008_363_5033300034110FreshwaterMSYAILFTTGLLIGFVAGLLVYRKHTDRLKSTEDKGKSIIDALKGR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.