Scaffold Ga0208975_1000348

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000348
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23091
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (87.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F005558	Metagenome	396	Y
F020684	Metagenome	222	Y
F023834	Metagenome	208	Y
F026539	Metagenome / Metatranscriptome	197	Y
F082579	Metagenome	113	N
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100034823	F082579	N/A	MTDEYAAQYWHQQGWLACRLAYKLYIDAQESEAVKV
Ga0208975_100034828	F020684	AGG	MRKVGPTCVATVRKVHMVLSNYALTIEEEATCVEVGYQRQKPYFGDPTKNVNYSEGDLWETWQHVVCAGSELAFARMVGKNDFIPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSTRDNDNLVYVLMSDGLCHKTRRVGPDWKGPEYKAIGWKLGSECKRDEWRYNDRTWYVPVVHLNPMESLVLNG
Ga0208975_100034832	F003784	GAG	MDHSGTDFAAYGLSSPEPRQVQRDTGSKTATNPLVDHAAVTGYRAIGVSTEDLTSFIESFASLRAQRVKGVGHSQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE
Ga0208975_100034833	F026539	N/A	VSELHKSIYDIAPSVASAIARRFRGYVERDDVLQECLAWSLTRGKHFDEMLNEPNPVQRVINEKRIAWQMKRAAERYARKEKAAKSGYRTGDEAFYDTAMIAQVLPHVIASIVDDTVLEQAQNLINDGSPKKPSVPAEGGNLLASLIDVKRSYLKLEVEDQAILRMRYHEGQTLQQVAGILECAVSTADRRCTSALRKVQNGLGGDNPWQ
Ga0208975_100034836	F095162	GGAGG	MENEKRLASAAKQAVYYRNYRRARDRALVKLAQTYPDAYKELLEKEKVSDEQEGKAWIDLNGTTISPRIVARAKARGITFTQTDTDQGNDGGEG
Ga0208975_100034838	F023834	AGAAGG	MNKEYWQAKAELCRDLALIQIEDEETEKEAGMNLMRMTYALSMVDVYSEGKGENE
Ga0208975_100034840	F093528	AGGAGG	MSEETSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDVPDKAVNDVVKEIQEEAGE
Ga0208975_100034841	F005558	AGGAG	MDQESMSWSELAELTHATQVERFNFCTCEDNEGNENPYNDCPKEDK