Scaffold Ga0208975_1000235

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000235
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29818
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (30.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y
F082108	Metagenome	113	N
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100023510	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNPYGGSTGGGYTPSAPKNDDTRSLSIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGQSAAAASHTEHFANRNDPF
Ga0208975_100023514	F025437	GAG	MQMRPFELRQLKVSKEQYFARLGFSDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVAELSKYKELYLTLKRTFDEF
Ga0208975_100023519	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDDKNSDEILAKWLGYVHVADFYNYEMQITYVEETYNEDGYTNTTAYPKTCIYGETPKLADDIYIKWMNWATQVASEE
Ga0208975_100023525	F082108	AGG	MLYIVTPCSRPQNLVRLKQHIPPYATWVVMMDASTNYKGATSASITHYSSRTGNAGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPYDLPNLRFEMAYDADGTFAQAASEQGTLICVEQYLCYYNALK
Ga0208975_10002353	F093771	N/A	MRFVSWYLPTRTPLTKMTKESADSVVTSWSLTGTGLLVSYVHQAFGLLVLVASLGYTLWKWRRDYLKDKGAN
Ga0208975_10002356	F014228	N/A	MNGSTPSKLNPNRLVMWTILLTATLAVVSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVLVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLALILVGAYIVKRWVDKLTE
Ga0208975_10002358	F009600	N/A	MRLSDTRQLTYKVVVGKVPSLNAFYASKHWTVRAKAKTKHCQEVMLQLAAYDLQQITDVQILCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRTYVQSLKMVHDKSIPKDTAEITFTGLVVTE
Ga0208975_10002359	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQARIDVLEQQSILFI