Basic Information | |
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Taxon OID | 3300027659 Open in IMG/M |
Scaffold ID | Ga0208975_1000235 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29818 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (30.43%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009600 | Metagenome | 315 | Y |
F014228 | Metagenome | 264 | N |
F015723 | Metagenome / Metatranscriptome | 252 | Y |
F024249 | Metagenome | 206 | N |
F025437 | Metagenome | 201 | N |
F039112 | Metagenome | 164 | Y |
F082108 | Metagenome | 113 | N |
F093771 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208975_100023510 | F015723 | N/A | MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNPYGGSTGGGYTPSAPKNDDTRSLSIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGQSAAAASHTEHFANRNDPF |
Ga0208975_100023514 | F025437 | GAG | MQMRPFELRQLKVSKEQYFARLGFSDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVAELSKYKELYLTLKRTFDEF |
Ga0208975_100023519 | F024249 | N/A | MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDDKNSDEILAKWLGYVHVADFYNYEMQITYVEETYNEDGYTNTTAYPKTCIYGETPKLADDIYIKWMNWATQVASEE |
Ga0208975_100023525 | F082108 | AGG | MLYIVTPCSRPQNLVRLKQHIPPYATWVVMMDASTNYKGATSASITHYSSRTGNAGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPYDLPNLRFEMAYDADGTFAQAASEQGTLICVEQYLCYYNALK |
Ga0208975_10002353 | F093771 | N/A | MRFVSWYLPTRTPLTKMTKESADSVVTSWSLTGTGLLVSYVHQAFGLLVLVASLGYTLWKWRRDYLKDKGAN |
Ga0208975_10002356 | F014228 | N/A | MNGSTPSKLNPNRLVMWTILLTATLAVVSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVLVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLALILVGAYIVKRWVDKLTE |
Ga0208975_10002358 | F009600 | N/A | MRLSDTRQLTYKVVVGKVPSLNAFYASKHWTVRAKAKTKHCQEVMLQLAAYDLQQITDVQILCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRTYVQSLKMVHDKSIPKDTAEITFTGLVVTE |
Ga0208975_10002359 | F039112 | N/A | MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQARIDVLEQQSILFI |
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