NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1000235

Scaffold Ga0208975_1000235


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1000235 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29818
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (30.43%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F014228Metagenome264N
F015723Metagenome / Metatranscriptome252Y
F024249Metagenome206N
F025437Metagenome201N
F039112Metagenome164Y
F082108Metagenome113N
F093771Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100023510F015723N/AMSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNPYGGSTGGGYTPSAPKNDDTRSLSIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGQSAAAASHTEHFANRNDPF
Ga0208975_100023514F025437GAGMQMRPFELRQLKVSKEQYFARLGFSDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVAELSKYKELYLTLKRTFDEF
Ga0208975_100023519F024249N/AMIFTYNDLKFWLEDADLLPQSYWDALEDYDPDDKNSDEILAKWLGYVHVADFYNYEMQITYVEETYNEDGYTNTTAYPKTCIYGETPKLADDIYIKWMNWATQVASEE
Ga0208975_100023525F082108AGGMLYIVTPCSRPQNLVRLKQHIPPYATWVVMMDASTNYKGATSASITHYSSRTGNAGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPYDLPNLRFEMAYDADGTFAQAASEQGTLICVEQYLCYYNALK
Ga0208975_10002353F093771N/AMRFVSWYLPTRTPLTKMTKESADSVVTSWSLTGTGLLVSYVHQAFGLLVLVASLGYTLWKWRRDYLKDKGAN
Ga0208975_10002356F014228N/AMNGSTPSKLNPNRLVMWTILLTATLAVVSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVLVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLALILVGAYIVKRWVDKLTE
Ga0208975_10002358F009600N/AMRLSDTRQLTYKVVVGKVPSLNAFYASKHWTVRAKAKTKHCQEVMLQLAAYDLQQITDVQILCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRTYVQSLKMVHDKSIPKDTAEITFTGLVVTE
Ga0208975_10002359F039112N/AMTLSFSSDVYTEMVQVQQAQIQALQNKVAELQARIDVLEQQSILFI

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