Scaffold Ga0209007_1000037

Overview

Basic Information

• Taxon OID: 3300027652
• Scaffold ID: Ga0209007_1000037
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97268
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000378	Metagenome / Metatranscriptome	1211	Y
F004553	Metagenome / Metatranscriptome	433	Y
F014644	Metagenome / Metatranscriptome	261	Y
F039510	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_100003738	F004553	AGGAG	LKRRLGKTTVAALVAAAFMWFVAATPQAHADDRSHCQHAVEKAEANLDKAIHDHGDHSHEADDRRRDLNAERQRCWDAYHQWWNGKEHRWETERTW
Ga0209007_100003745	F014644	N/A	MDKKQINSPKMTLNFLIWIGGVFMLLLFALLAHFVWRIF
Ga0209007_100003748	F039510	GAG	MDRPNIEQLRDELERLMREQIESLARQTFVGITEADLKEERERLKRIREVSADFLEALKRADL
Ga0209007_100003792	F000378	GGAGG	MEDRAPAVSPSVSQQSSQQQAASKHREGRGAWVLTAYGISGLALFGVLAYFFSDFIAH