Scaffold Ga0209217_1000991

Overview

Basic Information

• Taxon OID: 3300027651
• Scaffold ID: Ga0209217_1000991
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8771
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003900	Metagenome / Metatranscriptome	463	Y
F005427	Metagenome	401	Y
F023442	Metagenome	210	Y
F040310	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209217_100099111	F005427	GGAG	MHSDIEIRPSVGSLATNIRDWVSQRAAKIQRRISSLVNTPKKRIGAKLSAGGMHNMIPPGTVLAGAVAFGFWWNSVSAGLFAGSALFFMACIYKALRQIVAIFRWERDRAVALNSNWNTAGTVERSQRNLEVGTRAIERLRPWVEDATPLTEENAKAYCSVLLDTLAALHPKFAE
Ga0209217_100099115	F003900	GGAGG	MSPQFPNRSTLHAKKVLLIDRCQATREVRAAVLRSHGVDVHEAEELFPARFLWQPNLYDLVMLDVRRYSPGEVLEFYGQIRDTSPGQRFAFLMGAPTYLSLNWPAEITVDRVLRGQWAETVRRFMAAA
Ga0209217_10009913	F023442	GGAG	MKSPAMLWFAALVFASSLGLRTGLTQTQSGKEPLKAVRITGCLVKGDEPKEVWLAEKNGRIYGLESSKIELNAHLGHKVIVTGHVLREKGEAGEETQKQNKTGKRETADFRVLTLQVISTTCTQ
Ga0209217_10009919	F040310	AGGAGG	MRTPMPWRTERGRYFHAHPQQAMFSLIASLLLAGLVVLALALSAR