Scaffold Ga0208960_1051134

Overview

Basic Information

• Taxon OID: 3300027649
• Scaffold ID: Ga0208960_1051134
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1320
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F015208	Metagenome / Metatranscriptome	256	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208960_10511341	F015208	GGA	MYKITVANDSEPLHFVKEYSDELEAQTEFAKYVDWGFADEYSTVNLYTPSGKCYTKLFYREGRRVVVK
Ga0208960_10511342	F101047	AGGA	MVRMKELYTQILECETCYGKGWLYYGDEDNYDVEACQCNPLSFFQENK
Ga0208960_10511343	F000447	GAGG	MGYIEIFRIDQDGAGWVDLSDATPDELFNIELGLLNEGALFSSPEAD
Ga0208960_10511344	F007263	GGAG	MIKEYIDENEFYFIKDQQHFCCDESQFVYVCKEHGEQMDCYFCGFNYDENCEEQH
Ga0208960_10511345	F013527	AGGAGG	MNVYEFNAFINVEAESYDEAIDVFQFQLKYGINKDNVYVADIKDLELAND