Scaffold Ga0209466_1020377

Overview

Basic Information

• Taxon OID: 3300027646
• Scaffold ID: Ga0209466_1020377
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1380
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000788	Metagenome / Metatranscriptome	891	Y
F069757	Metagenome / Metatranscriptome	123	N
F083404	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209466_10203771	F000788	GGA	MKPRTVYEKAVQDFTETAGRLGRLDQHVRQASFAEFKILMAFETFDDEALKRYGLSKPMVERVLLKVYQTVVLGQQRYSDHS
Ga0209466_10203772	F083404	GGAGG	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0209466_10203773	F069757	GGAGG	MSGRTIGNLILMTLICVVVFIVFMAVRPTKASAQNFQREAELSDLARPYHPATVLDLISPEAVTCS