Metagenome / Metatranscriptome Family F083404

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083404
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	100 residues
Representative Sequence	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS
Number of Associated Samples	81
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.82 %
% of genes near scaffold ends (potentially truncated)	44.25 %
% of genes from short scaffolds (< 2000 bps)	84.07 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (65.487 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.363 % of family members)
Environment Ontology (ENVO)	Unclassified (64.602 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.442 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.42% β-sheet: 0.00% Coil/Unstructured: 60.58%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF12833	HTH_18	5.31
PF00589	Phage_integrase	2.65
PF00072	Response_reg	1.77
PF04392	ABC_sub_bind	1.77
PF13551	HTH_29	0.88
PF13414	TPR_11	0.88
PF13180	PDZ_2	0.88
PF01381	HTH_3	0.88
PF01520	Amidase_3	0.88
PF04909	Amidohydro_2	0.88
PF01068	DNA_ligase_A_M	0.88
PF01425	Amidase	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.77
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.88
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.49 %
All Organisms	root	All Organisms	34.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.49 %
cellular organisms	root	All Organisms → cellular organisms	34.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.49 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.09 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.49 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.32 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.49 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	21.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	21.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10054582	Not Available	886	Open in IMG/M
3300001431\|F14TB_101184403	Not Available	1385	Open in IMG/M
3300004629\|Ga0008092_11336449	Not Available	741	Open in IMG/M
3300005332\|Ga0066388_103266359	Not Available	828	Open in IMG/M
3300005332\|Ga0066388_104467980	Not Available	712	Open in IMG/M
3300005332\|Ga0066388_105342484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300005332\|Ga0066388_108640647	Not Available	506	Open in IMG/M
3300005363\|Ga0008090_10202141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1722	Open in IMG/M
3300005444\|Ga0070694_101452304	Not Available	580	Open in IMG/M
3300005445\|Ga0070708_100226855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1752	Open in IMG/M
3300005536\|Ga0070697_100033944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4112	Open in IMG/M
3300005713\|Ga0066905_100727219	Not Available	854	Open in IMG/M
3300005764\|Ga0066903_102798790	Not Available	946	Open in IMG/M
3300005764\|Ga0066903_104069495	Not Available	783	Open in IMG/M
3300005764\|Ga0066903_106304152	Not Available	619	Open in IMG/M
3300009147\|Ga0114129_10435373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1722	Open in IMG/M
3300009792\|Ga0126374_10449400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300010043\|Ga0126380_10711866	Not Available	809	Open in IMG/M
3300010046\|Ga0126384_11191500	Not Available	702	Open in IMG/M
3300010046\|Ga0126384_11250819	Not Available	687	Open in IMG/M
3300010047\|Ga0126382_10433656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1036	Open in IMG/M
3300010358\|Ga0126370_10243757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1389	Open in IMG/M
3300010359\|Ga0126376_11495761	Not Available	704	Open in IMG/M
3300010360\|Ga0126372_10261623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1492	Open in IMG/M
3300010361\|Ga0126378_10493495	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300010362\|Ga0126377_11820638	Not Available	684	Open in IMG/M
3300010398\|Ga0126383_11368661	Not Available	798	Open in IMG/M
3300010863\|Ga0124850_1005272	Not Available	4047	Open in IMG/M
3300010863\|Ga0124850_1034321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1620	Open in IMG/M
3300010863\|Ga0124850_1041871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1456	Open in IMG/M
3300010863\|Ga0124850_1056373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1223	Open in IMG/M
3300010863\|Ga0124850_1106708	Not Available	767	Open in IMG/M
3300010868\|Ga0124844_1099831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1101	Open in IMG/M
3300010868\|Ga0124844_1260137	Not Available	604	Open in IMG/M
3300012361\|Ga0137360_10583734	Not Available	956	Open in IMG/M
3300016294\|Ga0182041_11016375	Not Available	750	Open in IMG/M
3300016319\|Ga0182033_11106904	Not Available	707	Open in IMG/M
3300016371\|Ga0182034_10146909	Not Available	1765	Open in IMG/M
3300016371\|Ga0182034_10990801	Not Available	725	Open in IMG/M
3300016422\|Ga0182039_11549536	Not Available	604	Open in IMG/M
3300016445\|Ga0182038_11237768	Not Available	666	Open in IMG/M
3300016445\|Ga0182038_11854300	Not Available	545	Open in IMG/M
3300021560\|Ga0126371_10946626	Not Available	1004	Open in IMG/M
3300021560\|Ga0126371_12899469	Not Available	581	Open in IMG/M
3300025910\|Ga0207684_10067830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3032	Open in IMG/M
3300027646\|Ga0209466_1020377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1380	Open in IMG/M
3300031543\|Ga0318516_10251875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1021	Open in IMG/M
3300031543\|Ga0318516_10282556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	959	Open in IMG/M
3300031544\|Ga0318534_10160300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1299	Open in IMG/M
3300031544\|Ga0318534_10202281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1146	Open in IMG/M
3300031545\|Ga0318541_10041009	Not Available	2342	Open in IMG/M
3300031546\|Ga0318538_10374609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300031549\|Ga0318571_10243695	Not Available	658	Open in IMG/M
3300031668\|Ga0318542_10007158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4012	Open in IMG/M
3300031668\|Ga0318542_10505424	Not Available	628	Open in IMG/M
3300031680\|Ga0318574_10094587	Not Available	1649	Open in IMG/M
3300031719\|Ga0306917_10097571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2101	Open in IMG/M
3300031719\|Ga0306917_10848486	Not Available	715	Open in IMG/M
3300031719\|Ga0306917_10863765	Not Available	708	Open in IMG/M
3300031736\|Ga0318501_10018687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2867	Open in IMG/M
3300031744\|Ga0306918_10921371	Not Available	680	Open in IMG/M
3300031747\|Ga0318502_10842306	Not Available	556	Open in IMG/M
3300031763\|Ga0318537_10199121	Not Available	745	Open in IMG/M
3300031770\|Ga0318521_10743509	Not Available	596	Open in IMG/M
3300031771\|Ga0318546_10703298	Not Available	711	Open in IMG/M
3300031771\|Ga0318546_11131321	Not Available	550	Open in IMG/M
3300031778\|Ga0318498_10555448	Not Available	503	Open in IMG/M
3300031793\|Ga0318548_10564138	Not Available	554	Open in IMG/M
3300031795\|Ga0318557_10037954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1981	Open in IMG/M
3300031819\|Ga0318568_10159175	Not Available	1383	Open in IMG/M
3300031821\|Ga0318567_10604788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300031831\|Ga0318564_10316349	Not Available	688	Open in IMG/M
3300031835\|Ga0318517_10133777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1102	Open in IMG/M
3300031846\|Ga0318512_10277140	Not Available	831	Open in IMG/M
3300031859\|Ga0318527_10012632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2844	Open in IMG/M
3300031860\|Ga0318495_10196454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300031879\|Ga0306919_10269952	Not Available	1284	Open in IMG/M
3300031880\|Ga0318544_10017044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2389	Open in IMG/M
3300031890\|Ga0306925_10012084	All Organisms → cellular organisms → Bacteria → Proteobacteria	8341	Open in IMG/M
3300031890\|Ga0306925_10022695	All Organisms → cellular organisms → Bacteria	6297	Open in IMG/M
3300031890\|Ga0306925_10177379	Not Available	2295	Open in IMG/M
3300031890\|Ga0306925_10402579	Not Available	1467	Open in IMG/M
3300031893\|Ga0318536_10272720	Not Available	859	Open in IMG/M
3300031894\|Ga0318522_10246282	Not Available	677	Open in IMG/M
3300031896\|Ga0318551_10650441	Not Available	609	Open in IMG/M
3300031941\|Ga0310912_10351771	Not Available	1144	Open in IMG/M
3300031942\|Ga0310916_10203223	Not Available	1658	Open in IMG/M
3300031945\|Ga0310913_10677908	Not Available	729	Open in IMG/M
3300031947\|Ga0310909_10418223	Not Available	1125	Open in IMG/M
3300031954\|Ga0306926_10091910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3709	Open in IMG/M
3300031954\|Ga0306926_10774743	Not Available	1158	Open in IMG/M
3300031954\|Ga0306926_11146467	Not Available	917	Open in IMG/M
3300032001\|Ga0306922_10436168	Not Available	1401	Open in IMG/M
3300032001\|Ga0306922_10771047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300032008\|Ga0318562_10253936	Not Available	1021	Open in IMG/M
3300032010\|Ga0318569_10399168	Not Available	641	Open in IMG/M
3300032035\|Ga0310911_10217948	Not Available	1088	Open in IMG/M
3300032035\|Ga0310911_10611846	Not Available	632	Open in IMG/M
3300032039\|Ga0318559_10251478	Not Available	817	Open in IMG/M
3300032042\|Ga0318545_10002572	All Organisms → cellular organisms → Bacteria → Proteobacteria	4873	Open in IMG/M
3300032044\|Ga0318558_10261661	Not Available	852	Open in IMG/M
3300032065\|Ga0318513_10672636	Not Available	507	Open in IMG/M
3300032068\|Ga0318553_10013585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3647	Open in IMG/M
3300032180\|Ga0307471_101186253	Not Available	928	Open in IMG/M
3300032261\|Ga0306920_100789040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1395	Open in IMG/M
3300032261\|Ga0306920_102555202	Not Available	701	Open in IMG/M
3300032261\|Ga0306920_103899596	Not Available	543	Open in IMG/M
3300033289\|Ga0310914_10373089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1290	Open in IMG/M
3300033289\|Ga0310914_10929098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300033290\|Ga0318519_10598651	Not Available	669	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.11%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.53%
Loam	Environmental → Terrestrial → Soil → Loam	18.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.54%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.24%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100545823	3300000793	Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNANERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRAT
F14TB_1011844034	3300001431	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS*
Ga0008092_113364491	3300004629	Tropical Rainforest Soil	MFVNQPDDAQLVALWHAPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLYRSRS*
Ga0066388_1032663591	3300005332	Tropical Forest Soil	MFVNQPDDAQLAALWHEPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNATERRVDESSDGADGRPNLKKCDRLLRRLIAVHGEPRFDLFNSRPSKTHSEIRSETRQMSPDD*
Ga0066388_1044679802	3300005332	Tropical Forest Soil	MFVNQPDDAQLVALWHERETCHTIARRLGVNEIWLTLQWRRLRQCGRLPRERRNASRWHLSDTSSDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS*
Ga0066388_1053424842	3300005332	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVRQTWLTLRWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLYKSRS*
Ga0066388_1086406472	3300005332	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRPLKRLIAVHGEPRFDLFNSRRATCS*
Ga0008090_102021412	3300005363	Tropical Rainforest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNANERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS*
Ga0070694_1014523041	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRHNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS*
Ga0070708_1002268552	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS*
Ga0070697_1000339442	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRAACS*
Ga0066905_1007272192	3300005713	Tropical Forest Soil	MFVNQPDEAQLVALWHQRETCPTIARRLGVNEIWLTLQWRRLRQFGKLPRERRNASRRHLNDTGSDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS*
Ga0066903_1027987902	3300005764	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQMWLTIQWRRLRQEDRLPTDRRRNASQRFVDESSDGADGRPTIETRDRLLKRLIAVHGEPRFDLYRSRS*
Ga0066903_1040694952	3300005764	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNANERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDFFNSRRATRS*
Ga0066903_1063041522	3300005764	Tropical Forest Soil	MFVNQPDDAQLVAVWHDPETCPAIARRLGVSQMWLTMQWRRLRQEDRLPTDRRRNASERFVDESNDGADGRPDLKKCDRLLRRLIAVHGEPRFDLYRSRS*
Ga0114129_104353733	3300009147	Populus Rhizosphere	MFVNQPDDAQLVALWNDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS*
Ga0126374_104494002	3300009792	Tropical Forest Soil	VFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPDLKKCDRLLRRLIAVQGEPRFDLFNSRRATCS*
Ga0126380_107118661	3300010043	Tropical Forest Soil	MFVKQPDDAQLVALWDDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNANERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS*
Ga0126384_111915002	3300010046	Tropical Forest Soil	VFRGRRIMIDDEQIAALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLLAVH
Ga0126384_112508192	3300010046	Tropical Forest Soil	MFVNQPDDAQLVALWHQRETCPTIARRLGVNEIWLTLQWRRLRQCGRLPRERRNASRHLSDTGSDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS*
Ga0126382_104336561	3300010047	Tropical Forest Soil	MFVNQPDDAQLVALWHQRETCPTIARRLGVNEIWLTLQWRRLRQFGKLPRERRNASRRHLNDTGSDHVDGRPDIGKKDRLLRRLIAVHGEPRFD
Ga0126370_102437572	3300010358	Tropical Forest Soil	MFVNQPDDAQLVALWDNPETCPAIARRLGVSQTWLTLQWHRLRQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS*
Ga0126376_114957612	3300010359	Tropical Forest Soil	MFVNQPDDAQLVALWNDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRA
Ga0126372_102616232	3300010360	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS*
Ga0126378_104934951	3300010361	Tropical Forest Soil	MFVNQPDDAQLVALWHQRETCPTIARRLGVNEIWLTLQWRRLRQCGRLPRERRNASRRHLSDTGSDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS*
Ga0126377_118206382	3300010362	Tropical Forest Soil	MFVNQPDDAQLVALWHDLETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS*
Ga0126383_113686612	3300010398	Tropical Forest Soil	MFVNQPDDAQLVALWHERETCPTIARRLGVNEIWLTLQWRRLRQFGKLPRERRNASRRHLNDTGSDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS*
Ga0124850_100527210	3300010863	Tropical Forest Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNLRRPTCS*
Ga0124850_10343212	3300010863	Tropical Forest Soil	MFVNQPDDAQLVALWNDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS*
Ga0124850_10418712	3300010863	Tropical Forest Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQTWLTLQWRRLRQQDRFPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS*
Ga0124850_10563732	3300010863	Tropical Forest Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS*
Ga0124850_11067082	3300010863	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWHRLRQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTRS*
Ga0124844_10998311	3300010868	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQIWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPDLKKCDRLLRRLIAVHGEPRFDLFVPATSSSQLERE*
Ga0124844_12601371	3300010868	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQIWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPDLKKCDRLLRRLIAVHGEPRFDLFVPATSSSQLARMKLLGATAC
Ga0137360_105837342	3300012361	Vadose Zone Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWCRLRQQDRLPTDRRRNAGERRVDESSDGADGRPTIKTRDRLLERLIAVHGEPRFDLFNSRRATCS*
Ga0182041_110163752	3300016294	Soil	DAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLREQDRLPTDRRRNASERRVDESIDGADGRPTIKTHDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0182033_111069043	3300016319	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVH
Ga0182034_101469091	3300016371	Soil	QLVALWHDPETCPAIARRLGVSQTWLTLQWRRLREQDRLPTDRRRNASERRVDESIDGADGRPTIKTHDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0182034_109908011	3300016371	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLF
Ga0182039_115495361	3300016422	Soil	GRDMFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNSSERRVDESSDGADGRPNLKKCDRLLRRLIAVHGEPRFDLFNSRRVTCS
Ga0182038_112377683	3300016445	Soil	MFVNQPDDAQLVALWHERETCPTIARRLGVNEIWLTLQWRRLRQCGRLPRERRNTSRRHLSDTGRDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS
Ga0182038_118543002	3300016445	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWCRLRQQDRLPTDRRRNASERRVEESSDGADGRPDLKKCDRLLRRLIAVHGEPRFDLFNSRKATCS
Ga0126371_109466262	3300021560	Tropical Forest Soil	MFVNQPDDAQLVALWNDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRL
Ga0126371_128994692	3300021560	Tropical Forest Soil	MFVNQPDDAQLVALWHERETCPTIARRLGVNEIWLTLQWRRLRQCGRLPRERRNASRRHLSDTGSDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS
Ga0207684_100678303	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS
Ga0209466_10203772	3300027646	Tropical Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0318516_102518751	3300031543	Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318516_102825561	3300031543	Soil	FVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0318534_101603003	3300031544	Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0318534_102022812	3300031544	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNLRRATGS
Ga0318541_100410096	3300031545	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0318541_101430952	3300031545	Soil	MVIDDEQLVALWHDPATCPVIARRNGVTQTWLTLEWRRLRMAGLIPADRRRNASQRFEDEASDGTDGRPDIKKGDRLLRRLHAVHPERHLCS
Ga0318538_103746093	3300031546	Soil	PETCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0318571_102436951	3300031549	Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNLR
Ga0318515_107331261	3300031572	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRCVREPARGRRDLRLTHREVPVVRDRGRVRP
Ga0318542_100071587	3300031668	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0318542_105054243	3300031668	Soil	NQPDDAQLVALWDDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318574_100945875	3300031680	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESIDGADGRPDLKKCDRLLRRLIAVHGEPRFDLFNSRRATCS
Ga0306917_100975711	3300031719	Soil	AQLVALWHDPETCPAIARRLGVSQTWLTLQWCRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS
Ga0306917_108484861	3300031719	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHG
Ga0306917_108637651	3300031719	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVH
Ga0318501_100186871	3300031736	Soil	VNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWCGLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLERLIAVHGEPRFDLFNSMRATCS
Ga0306918_109213711	3300031744	Soil	MFVNQPDDAQLVALWNDPETCPAIARRLGVSQTWLTFQWRRLRQQDRLPTDRRRNASERFVDESSDGADGRPTIKTRDRLLKRLIAVHGE
Ga0318502_102613643	3300031747	Soil	MVIDDEQLVALWHDPATCPVIARRNGVTQTWLTLEWRRLRMAGLIPADRRRNASQRFEDEASDGTDGRPDIKKGDRLLRRLHAVHPERHLC
Ga0318502_108423061	3300031747	Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318537_101991211	3300031763	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESSDGADGRPDLKKCDRLLRRLIAVHGEPRFDLFNSRRATCS
Ga0318521_107435091	3300031770	Soil	MFVNQPDDAQLVALWGDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFDSRR
Ga0318546_107032982	3300031771	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWCRLRQQDRLPTDRRRNASERRVDESSDGADGRSTIKTRDRLLKRLIAVHG
Ga0318546_111313212	3300031771	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNGSERFVDESIDGADGRPTIKTRDRLLKRLITVHGEPRFDLFNSRRATCS
Ga0318498_105554481	3300031778	Soil	DAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0318548_105641381	3300031793	Soil	PETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318557_100379542	3300031795	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNLRRATGS
Ga0318568_101591753	3300031819	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0318567_106047882	3300031821	Soil	DPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0318564_103163491	3300031831	Soil	TETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318517_101337772	3300031835	Soil	AQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNLRRATGS
Ga0318512_102771402	3300031846	Soil	TCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318527_100126322	3300031859	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNLRRATGS
Ga0318495_101964543	3300031860	Soil	DAQLVALWNDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0306919_102699522	3300031879	Soil	LVALWHDPETCPAIARRLGVSQTWLTLQWRRLREQDRLPTDRRRNASERRVDESIDGADGRPTIKTHDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0318544_100170441	3300031880	Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0306925_100120842	3300031890	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWCRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS
Ga0306925_100226951	3300031890	Soil	RDMFVNQPDDAQLVALWDDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0306925_101773793	3300031890	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLREQDRLPTDRRRNASERRVDESIDGADGRPTIKTHDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0306925_104025792	3300031890	Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0318536_102727201	3300031893	Soil	GRDMFVNQPDDAQLVALWDDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318522_102462821	3300031894	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318551_106504412	3300031896	Soil	VSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRASCS
Ga0310912_103517713	3300031941	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWCRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLERLIAVHGEPRFDLFNSMRATCS
Ga0310916_102032233	3300031942	Soil	DPETCPAIARRLGVSQTWLTLQWRRLREQDRLPTDRRRNASERRVDESIDGADGRPTIKTHDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0310913_106779081	3300031945	Soil	RDMFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESIDGADGRPDLKKCDRLLRRLIAVHGEPRFDLFNSRRATCS
Ga0310909_104182233	3300031947	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0306926_100919101	3300031954	Soil	DMFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWCRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS
Ga0306926_107747431	3300031954	Soil	SRDPITPQLSSSLVPEAGDMFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPMDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFDSRRATCS
Ga0306926_111464672	3300031954	Soil	QPDDAQLVALWDDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0306922_104361682	3300032001	Soil	MIDDEQLAALWHDRETCPAIARRLGVNQTWLTIQWRRLRQQGTLPTDRRRNGSERYLDESNDRADGRPNLRASDRLLKRLFAVHPERRPCS
Ga0306922_107710471	3300032001	Soil	PDDAQLVALWDDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318562_102539361	3300032008	Soil	MFVNQPDDAQLVALWDDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHG
Ga0318569_103991682	3300032010	Soil	LVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0310911_102179481	3300032035	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFN
Ga0310911_106118462	3300032035	Soil	DDAQLVALWHERETCPTIARRLGVNEIWLTLQWRRLRQCGRLPRERRNASRRHLSDTGSDHVDGRPDIGKKDRLLRRLIAVHGEPRFDLYRSRS
Ga0318559_102514781	3300032039	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVHGEPRFDLF
Ga0318545_100025729	3300032042	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRCVREPARGRRDLR
Ga0318558_102616613	3300032044	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0318513_106726361	3300032065	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIA
Ga0318553_100135853	3300032068	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVRQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNLRRATGS
Ga0307471_1011862532	3300032180	Hardwood Forest Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLERLIAVHGEPRFDLFNSRRATCS
Ga0306920_1007890402	3300032261	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNSSERRVDESSDGADGRPNLKKCDRLLRRLIAVHGEPRFDLFNSRRVTCS
Ga0306920_1025552021	3300032261	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASARRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFVPATSSSQLARMTL
Ga0306920_1038995963	3300032261	Soil	VNQPDDAQLVALWHDPETCPAIARRLGVSQMWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRPTCS
Ga0310914_103730892	3300033289	Soil	MFVNQPDDAQLVALWHDPETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASARRVDESSDGADGRPTIKTRDRLLKRLIAV
Ga0310914_109290983	3300033289	Soil	TCPAIARRLGVSQTWLTLQWRRLQQQDRLPTDRRRNASERRVDESIDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSRRATCS
Ga0318519_105986513	3300033290	Soil	VFVNQPDDAQLVSLWHDTETCPAIARRLGVSQTWLTLQWRRLRQQDRLPTDRRRNASERRVDESSDGADGRPTIKTRDRLLKRLIAVHGEPRFDLFNSTRRATCS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083404

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences