Scaffold Ga0209117_1000218

Overview

Basic Information

• Taxon OID: 3300027645
• Scaffold ID: Ga0209117_1000218
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33084
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020584	Metagenome / Metatranscriptome	223	Y
F065045	Metagenome	128	Y
F096701	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_100021812	F096701	AGG	MPKETAPQQSRFASILTDIHFWVPVAVLIGGLVLLKFLR
Ga0209117_10002182	F065045	AGGAG	MSIVSSIKPAVAARLGLTLLIVPIYFISASALRQNAPGLSLLGSPMILLGALLVAVTLNALPILSVNLRSDAPPVLNVSLSLRFWNLTAIVTALLLLGVLLGYAFVENFQARPGS
Ga0209117_10002183	F020584	GGA	MEKLQALQAAAREGGFVQVEESEEGTVVWLRKETPDAGTNTHQRICIDSAANILTVYWMTAPGKIDSKTFRNVSSLQEWFALHPAP