NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209135_1129546

Scaffold Ga0209135_1129546


Overview

Basic Information
Taxon OID3300027642 Open in IMG/M
Scaffold IDGa0209135_1129546 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)826
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004924Metagenome / Metatranscriptome418Y
F010227Metagenome / Metatranscriptome306Y
F075696Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209135_11295461F075696N/AKGNTMQNTKSKLDSLMLQLQTVLEEAELDEHVAIQNAFNALACALDEEIIA
Ga0209135_11295462F010227AGGAGMQATQFEVSDKLTLATTDTNTDSISTTYDCNVLVQLAGDSCWDCELEAVTVTSIHIHEQWWDELDGDSSIHITVCYNVNGDTEYEDSWRLYTDSGFVDAISTLLGTDVMFTEQGMQDDGYASMEL
Ga0209135_11295463F004924AGGAGMRDAILAKLAEVEDMLLEATLDGEQLAQLSCFAEVEGALSTL

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