NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209347_1076875

Scaffold Ga0209347_1076875


Overview

Basic Information
Taxon OID3300027640 Open in IMG/M
Scaffold IDGa0209347_1076875 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Source Dataset Sampling Location
Location NameMt. Terri, Switzerland
CoordinatesLat. (o)47.379Long. (o)7.1648Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034623Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0209347_10768752F034623N/AATERLLPHVHIKRYNVPIEIKLDGRRRGSLDHSRKANREANEITLQYKSRQEILLDEELAEEKLVQLLAVIRQLDQTPSGTAELRRRRKLFGVCERIEGETSGQFYARLRHWLDRDIPQRKSPLHAPRQTGD

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