NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209347_1001086

Scaffold Ga0209347_1001086


Overview

Basic Information
Taxon OID3300027640 Open in IMG/M
Scaffold IDGa0209347_1001086 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50484
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (65.91%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Source Dataset Sampling Location
Location NameMt. Terri, Switzerland
CoordinatesLat. (o)47.379Long. (o)7.1648Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002279Metagenome575Y

Sequences

Protein IDFamilyRBSSequence
Ga0209347_10010868F002279N/AMAAQPVTPPRPQYDWAKLVGHSLKQNGPWATWEKLVEARRAYPEDMLLRGYAEIVRNTIVRDLLAGPKGLQAAPKLTPDFLADFDRFNLTAQEGYLISLIDGRITLEMLLKLTPFDNFTTLFNMAKLEHQKAITIPS

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