Scaffold Ga0209818_1000023

Overview

Basic Information

• Taxon OID: 3300027637
• Scaffold ID: Ga0209818_1000023
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37428
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (94.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F033848	Metagenome	176	Y
F053644	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209818_100002312	F001505	GGA	MREPIVKNHSQVKIEFDPVRWAQLNPWLSEGQADDRIPMNRSVKGLIGPPSVQRAFARRSHQVMFKKWSQARRD
Ga0209818_10000235	F053644	AGTAGG	MKGLRIYLDLKRVNPQGEGVIFYSHRAGGPYYRWRYEERRGEWLCSRMHVGDLVITELVSAPWKEIPATLKSTLDLHYVE
Ga0209818_10000237	F033848	AGGAG	MKTFYAMRRANGDWFAVSDKGHLRVPIFNSSGDATTARLRDSGMECFRPVTFDASALEELRRTDGHTASFLVIIDPSRHLKHGLRLGFNELGPLMAT