Scaffold Ga0209330_1005894

Overview

Basic Information

• Taxon OID: 3300027619
• Scaffold ID: Ga0209330_1005894
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2772
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029171	Metagenome / Metatranscriptome	189	Y
F045910	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209330_10058942	F045910	GGAGG	MLEQDAGRKPSREFAASSALEMRRSQTNDPQQGARLVRAFLQITDPRVRLAIVQMVEKVGSAAAVDC
Ga0209330_10058943	F029171	AGGAG	MKFTVTSGAGVTEVVDRPESARAALERVLALLGRKRNDVRIFDEDGWRRTPVDLCRLAAQEVAMLPDESGLSF