Scaffold Ga0208974_1006319

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1006319
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4011
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100631910	F037701	GGAG	MIKTKEWRVSNRVWLGVGFNPRRIALGFSVDKFNANIDFLWFWISLEY
Ga0208974_10063195	F017788	AGGA	MKKIIITSLLISLLIPTASAHAAAKSLNTKGNKASCKSIKTKYESEIMSKWSNGLASDQDVLKEIDLNIDMLAAKQKPTTGKIKTTIASWITAEKNTKIALTDKNVEGITAAMNLKISSISNFDKLCKGIEK
Ga0208974_10063197	F054581	GGAG	MCPNCNITLIPILYGYSNKKYLDMHKEGLIFLVSTTYHTKNSPTSYCKKCNESFDIKLDSKL
Ga0208974_10063199	F020851	N/A	MSEDIVDLAISMAEIDTGMHLPLEEREAMKQRILARLEDINQ