Scaffold Ga0208974_1003982

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1003982
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5237
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100398212	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSRGFLKSRRTQRAFEASAAIARGQNEQING
Ga0208974_10039824	F011077	GAG	MITDNLTWAEEENNLWKGWTYSLEKNRYYFNDVGNESLAAFWADEFLNQAYA
Ga0208974_10039825	F037701	GGA	MIKSKEWRVSNRVWLGVGFNPRRIGLGFSVDRFNANIDFLWFWVSLEY
Ga0208974_10039828	F017788	AGGA	MKKIIVTSLLIVLLIPNAPVQAATKSLNTKGNKASCKNIKEKYKSEVMSKWSNGFASDQDVLTEIDLNIKMLTEKQKPTNGKIKTTIASWVTAEKNTKIALTDKNVEAVTAAMNLKISSITNFDKLCKSIEK