Scaffold Ga0208974_1002678

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1002678
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6580
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F024265	Metagenome	206	N
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10026781	F100669	AGGGGG	MTKGICDLRKFLHKAQVRLTEAGLLIIGYLRKTEARVRGINKLGDSYNAKYTQNRFR
Ga0208974_100267812	F010463	N/A	MVLAATIHRVKMCEDKLREFEQMVSTLTSTMAQNRAELASQGLEKLVMGVTTPLDIPKELVPTYGKGGARRNREFSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFAVRKAKGGSR
Ga0208974_10026782	F007164	N/A	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPAQWTPAQRTQFLEEARPIVEAYKEAGGEL
Ga0208974_10026786	F024265	AGTAG	MNESYVTPEVKANGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED