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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1001936 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7954 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (35.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043279 | Metagenome | 156 | N |
| F046246 | Metagenome | 151 | N |
| F083888 | Metagenome | 112 | N |
| F083896 | Metagenome / Metatranscriptome | 112 | N |
| F098560 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_100193612 | F083888 | N/A | MNHKTLPSSNHSPCECNSTSGDRIQGIPDKVQRPARKEINVTSIGSKMKIDNKGYKIVNLSSTLEPAGTGGKGMKKKKKYKDDDDSYDES |
| Ga0208974_10019364 | F083896 | N/A | MKTSTTGHQIELGEWLRDQCLAHILEHTPDSWVEAFEEKAGRLLRTQGSFTAHEVVSHVGPPPNHVNAIGAVCRAYARRNDLVGSYEKATNPAAHARVVVRWRDAHAR |
| Ga0208974_10019366 | F046246 | AGGA | MNFSEHAFDACCREAKAIGRRLNKTEWLEAMQEAYDSYPHEGLLATDTPKVRATRVKAVDAEWLESLEQNPAYAGIDIKRELGKAQAWASVRKVGVSQMRFLNWLNKAQVSDRPIQFNGAGATSFPPPSAQTSSEPNGWREWVRENSTDPSNADRPWNALEAVAQKYILTQLKK |
| Ga0208974_10019368 | F043279 | AGGAGG | MSTEETTPTCQPDVAHARAKDLDAASDAKLALICGEMTAGEIRTLRAMLSYILRPAAEEKLKGFQRMANALEIVRKYNEDVEKWMAQHIGHLRDDREKMERQIYSLKRRVSRIEKASIEQCNNK |
| Ga0208974_10019369 | F098560 | N/A | MKIEMKRPNKQMADNVETMLNDFAKISTIARTLKTQMVTVYRYISYLQYTKVMVSDAELKMIINHRKTRKAAAAAPAQSTPAPGVSHAATPVLGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |