Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1001615 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1001615 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8803
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (72.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8803

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (72.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F033434	Metagenome / Metatranscriptome	177	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y
F073553	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100161511	F004133	GGA	MKYTKEITDKLILDYRSGVAVAEIATGLDVPERSVIAKLSSLGVYTKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLAQSDPKLHKADTYSDEFALN
Ga0208974_100161512	F033434	N/A	MLFKKQEIHSLDFSGTEGLNVEGWETWAESVNLSHLYTWLLPQLVAYYGSWTLVKNGDTIDCLATIKANCPDPKSRAFYMLSRIKRSLLLATQTKTPDYATLTPLILMGQKRIRGVDYEAWRSASGLQYILEPRLLEAVILEPSDLEEVNSLGSDRLIEIQTQGLTTKTGKTAGSRKPAKSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDFNNWDSIPSPLISNNLFKEVVSTSTKQDSKKDMANLMPWDL
Ga0208974_100161514	F039640	GGA	MNIKQLVTEATTQTGRLDLLHYTNLVLLEACRLIKETPTTAAFTTFDVAVAETQRADCFREVYNLITENIKNGTS
Ga0208974_100161515	F062765	N/A	MGPVSLGWYRTRGLTQTQTKIATENTMFTTEGETYTSESITQHYSCGRIDVHNVPDEPYGDEINVPPMLSSDWHQLGLWLETVETMSVWTLQDLVTAYQQHNPKITWDTYEH
Ga0208974_100161521	F061859	GGA	MTIEALLIIVGFCLFACYLVYKWQESVVDMAIPPYQEPVKTEPDMADQWVAVNNTKTQTLDNIDNWNMKIGDKIWYKEAAAELEPTPLNPKAAWPFPSSTKP
Ga0208974_10016159	F073553	GGA	MTDHEFYAQIQEDYFQEFVDAELSQIFVCVNYHDEFFEFDDVPY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1001615

Overview

Ecosystem & Geography

Associated Families

Sequences