Scaffold Ga0208974_1000811

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000811
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12510
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F003522	Metagenome	481	Y
F004950	Metagenome	417	Y
F011921	Metagenome / Metatranscriptome	285	Y
F024784	Metagenome	204	Y
F068573	Metagenome	124	Y
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100081111	F003522	AGGA	MSNKDKILAYLTEPKTIKAIAEHVDANYHTIKNLLVAMKMEGLLYAYKDSDNRLMHYYVPQPHPLQAIFGHTANFTDAQIKSITIHNGADAKHNLQQKTTQETFGESITYTLGRYD
Ga0208974_100081114	F004950	AGGAG	MGKGSGRRPLLISEQEAQDNWDKIFKKKKNSDDVSPHAYEYELNKSTGDVEKRFIDGISKPNESQFDNIKDE
Ga0208974_100081122	F011921	N/A	MAIPFCILGVYNMANGLEQIADILKRLNDELKLDNDKWERANVTTTTLRPGDDGTAPITTTGEKHD
Ga0208974_100081128	F003066	AGGA	MKKEPVAWLYEEFDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLVPGEPVEEYKGLSKYDSKRLVEANNGL
Ga0208974_100081129	F068573	AGTAG	MDSKPLTQEEIMKAYNKAFPTRYEPMTLERMIQFARIIEQLHGVKDG
Ga0208974_100081131	F024784	GGAG	MDFLEKVIDWIVWGLVVGGMGWFAYGCYQLIDLFFLRR
Ga0208974_100081133	F002037	GAGG	MNKTYWVFIVVLAALAIWGTEKALGQTTTILAPDGSVTVCQVGSNGIIICV
Ga0208974_100081134	F093530	N/A	MRNAYASHTDFGFLRGVILDNPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLMIYGYSDDTGTEVNNFYKVTQDRLAIIGNGIEGLKDYIDAWYQSSNGVSSP