Scaffold Ga0208974_1000577

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000577
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14957
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y
F023275	Metagenome / Metatranscriptome	210	Y
F038086	Metagenome	166	N
F084217	Metagenome / Metatranscriptome	112	N
F097334	Metagenome	104	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100057711	F084217	AGG	MSDYLNYLDEVYTDLVAEYGEAITLAYHVANEKEM
Ga0208974_100057718	F023275	N/A	MAILDNLEASLADDDGMPSKKVTDAIREMLEDSEHHKLMERLKYMEENGI
Ga0208974_100057727	F097334	N/A	MPDVLLNNDDITVLGPPEIVELLVDVGATGTRGSQVFVGVGNPNIIEIGQTPLLNDLYINVSPGADYGYLYQYVSQPGGNLWIEVLELNPTIYSVNYVTTYTNGIAQIVIPISNIITSTATPLSANNFSVQFSIVNDNPVAASMSIPAIIEDSDNLVINFKAVEHRTNIDSGPYGDWAVLEGEVTTHLLITIIAVDEES
Ga0208974_10005773	F003393	GAGG	MIDLENDDTIALMDYYKVDILTAGQLMVDDCILVGDEVVSIVEIVSLPDGYTLEVINDFGEREVIEVGEYEQFNLMMLQ
Ga0208974_100057733	F038086	AGGAG	MAIATISNISNAIVFSVEDLNPTTTPSNIKPFNSTLSSIALGTVFAVTALTNSVVVSDLDRIVSSFEKVNYANVITPESILPFRVRLTNIGIEGYNPANPPGIGIQIIGFSNYIL
Ga0208974_10005775	F000808	GGA	MEYTYSLTTSYDGELIHTLRVSDMLEAVSAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0208974_10005776	F100416	AGAAGG	MGKVKEALIDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Ga0208974_10005779	F005348	AGG	MISSVMTFKCDECNGAGYIFWGDNLAYDVEKCECKNFALGTLFTTKEND