NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000112

Scaffold Ga0208974_1000112


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000112 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35732
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (65.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002268Metagenome / Metatranscriptome576Y
F007163Metagenome / Metatranscriptome356Y
F009605Metagenome / Metatranscriptome315Y
F044489Metagenome154Y
F073246Metagenome120Y
F091317Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100011213F007163GAGGMTLEDLQHIFDRQIEDGTERLYFMLVDGDRMPVVQRHPADDLAGLLPMLSHFQYHGNELMPRFRK
Ga0208974_100011217F002268AGGMSEFAGITGFIEIFEGRLAKMKLHLKAELSKAKHQRDRKAIRRITADAKKLNKTLKEMRNTVAQHCPHCGEKL
Ga0208974_100011236F044489AGGAGGMNAENTLIQLKLWCIKQSNDEQIWYNKDTTYFWNRGKDTAAGLVNGVVRKLAGIDASGRQIWVVAGSLKISQDGTILRFTGIPKKVQKTFESHTPTTNPTTIIPVLEAV
Ga0208974_10001125F091317GGAGMKVGRIDPAIAHNIELAKLTQQATIKQQQLKVIENRREEIKQMRPQDLDKGANIDEMV
Ga0208974_100011265F009605AGGAMKTILNTIWSVIVAFGEARYAASLARQGRVEEAKAVYDGPA
Ga0208974_10001128F073246GGAGMTPDHNLLCQTRSLYNEPYHIVRPLLPIRMQHGPRMIEWAAHKFGPAGERVRGIVGQTVKVEKPGLRYYVDPTAFWFRYVVDRDCFVAHWTKELKND
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Institute for Fundamental Biomedical Research
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