Scaffold Ga0208974_1000097

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000097
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39826
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (23.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019994	Metagenome / Metatranscriptome	226	Y
F031848	Metagenome / Metatranscriptome	181	N
F081032	Metagenome / Metatranscriptome	114	N
F084134	Metagenome / Metatranscriptome	112	N
F085605	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100009719	F081032	N/A	MRITHTPFKTRTRAIGSDVEMTLAFVGALKNPNKSAFSKLGKIATTLAKLFK
Ga0208974_100009724	F031848	AGCAGG	MSELFPEMGEQLSPRLKWQEQKQIKTMQKKDGNWIAYKSETRFNHSDDNEVNAVIGLAKKLKFKLWNQ
Ga0208974_10000974	F019994	N/A	MSSPVSYDLQGQGGGIVLSTAATTYTGKIRWIQVVNDAVLATVSSASGSITGASRLQTITLPAGLGIGGDFSSVVLTSGVVIVYYA
Ga0208974_100009743	F085605	N/A	MSNYTKDNGFRIITGRPRRKPWEQRVTASFRLTYETYQRIQRLAKREGINPSKALELLVRTEESEKIEPTQIVDYAKINHRGTGYTVTHILDKHFK
Ga0208974_100009763	F084134	GGTGG	MKTQAKKAAKRGRPAKKFLIVEDSTCSLNSLIDQQIEDQFTVIRMCSNTSWVIVRMDGLAVPVKCSSRISQKLLGKRIKVCLVSADPEDYYEYVS