Scaffold Ga0209370_1081841

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209370_1081841

Scaffold Ga0209370_1081841

Overview

Basic Information
Taxon OID	3300027606 Open in IMG/M
Scaffold ID	Ga0209370_1081841 Open in IMG/M
Source Dataset Name	Agave microbial communities from Guanajuato, Mexico - At.P.rz (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	772
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Guanajuato, Mexico
Coordinates	Lat. (^o)	20.6863	Long. (^o)	-101.8747	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004469	Metagenome	437	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209370_10818411	F004469	GGA	MSLFLKALGYNVYLATTNNAYCIDGKNLEANTKALNALKSTLNDDYLFRVANIDMAFVVWNTLISLGENEQYLAGSDSDVGSDTSNKCYMVQGDDPLEVNTESDDEDASMSYDELNSLCQLLLERYDIIKKENKILKKDIACMHNEHDSCRDNIACLEKNNKDLKKNIDCMHVENDSFRNKLACLEKEKEDLKNENVSL

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