3300027606: Agave microbial communities from Guanajuato, Mexico - At.P.rz (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027606
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104143 | Ga0209370
• Sample Name: Agave microbial communities from Guanajuato, Mexico - At.P.rz (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 442779093
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae	1
All Organisms → Viruses → Predicted Viral	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	4
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 20.6863
  • Long. (^o): -101.8747
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002466	Metagenome / Metatranscriptome	557	Y
F004469	Metagenome	437	Y
F042608	Metagenome	158	Y
F044772	Metagenome	154	Y
F046122	Metagenome	151	Y
F071719	Metagenome	122	Y
F076265	Metagenome	118	Y
F097652	Metagenome / Metatranscriptome	104	Y
F099947	Metagenome	103	Y
F103986	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209370_1000572	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae	46020
Ga0209370_1043725	All Organisms → Viruses → Predicted Viral	1223
Ga0209370_1064182	Not Available	922
Ga0209370_1080961	Not Available	778
Ga0209370_1081841	Not Available	772
Ga0209370_1090223	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	720
Ga0209370_1111838	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	618
Ga0209370_1117548	All Organisms → cellular organisms → Bacteria	597
Ga0209370_1126038	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	568
Ga0209370_1144629	Not Available	517
Ga0209370_1145578	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209370_1000572	Ga0209370_100057245	F097652	MANWVFITPTVDEAPFAWSPLMERFRLTRGVSVVEVSPGQYETTRYDAYTNELGAENLPQNPNQDTEFWPAERAGLHYFRGGYEWIVDDQIRSDIIASGAATAANFTPV
Ga0209370_1043725	Ga0209370_10437251	F071719	QFQYHFQDNSSSFHQNNEPINYEKMLEAMTHAQNARNRDIDMMVESLRSHRPDVTYHSVRAEESCCFENQDSISEQPFELAQTPNFEKDIDSLASYSFPEIELENEYDLEPQLSDSILLPDSIMTPVSSPDFNLFPESTLDPVPIHNEIESPIFEDHIELDQLYNFENPIDKLASSQFFDIELNEICDLDSQICDPVQLSESILTPVVLPNLSNILESVLIPPPIIPELESPI
Ga0209370_1064182	Ga0209370_10641821	F103986	MVLVVHKGIYYVPDEESTLAKVSSDPLHQSCLLARDGQGKYGGEEVTVDTAAGRILFLSHPRSNIKDSSCLLDGLLGEEMFINEGLPDFLLPPDLKNTIALSLVS
Ga0209370_1071305	Ga0209370_10713052	F042608	AQKREAQLAAQEAVEAISSDLRSLEAEEAEVGSAIDASNSALFDAEDKIKRAEEMIRKANLLLSKATQMRHEESARLKQLRARSEELAERKSSQRATLAETEARLAQAVDFDAAELRSQALAQAEDDRRTRLASLGDRIRSYHVRL
Ga0209370_1080961	Ga0209370_10809611	F099947	MATPLGKKFSTAENQVSQCDEQTFGSNSEFRKAGAARAPLAKSSRKVSAETEKVLCEPTAVIWRNKEARPQSDSFACENLVVQFDQGRFEEVLSGGGPMLRARKHRRVSTTKVSNQKPEAEFRQHPSASRVANQVPCEPKSPLPRRVWKPKQKSSTEASGVATPKPRLSREEKGKMPVCSNHRVKTAIIPSPNSRAAMPRAGLVLMSEATVPQRTRRVHDREAEAKV
Ga0209370_1081841	Ga0209370_10818411	F004469	MSLFLKALGYNVYLATTNNAYCIDGKNLEANTKALNALKSTLNDDYLFRVANIDMAFVVWNTLISLGENEQYLAGSDSDVGSDTSNKCYMVQGDDPLEVNTESDDEDASMSYDELNSLCQLLLERYDIIKKENKILKKDIACMHNEHDSCRDNIACLEKNNKDLKKNIDCMHVENDSFRNKLACLEKEKEDLKNENVSL
Ga0209370_1090223	Ga0209370_10902231	F044772	LKRVGLYPAVRAVQWGVPMSSHNFFGILERYNPRTGTFFTPVGEMGLALHELYEVSGLSSGDIPYEEFVPTTRELRLLEKESPQVYETYWEVMCHFYICGQTTAWRSGGVKQLSWADYLFNNVSNKDLPVIRLAPSSGGEVEDRIDAASDKFYTTESNEDGFDPDLVFESFHHQARTPISDQALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAHGHPIALLPAVVAGIQSGLRV
Ga0209370_1111838	Ga0209370_11118381	F044772	GVLERYNPLTGTFFTPVGEMGLALHELHEVSGLATGDSPYEEYVPTTEELNLMKKGSPQVYETYWEVLCHFHICGQITSWRARGVKQLSWASYLFNGVNQKDHPVTRLAPSSDEEITDRIQASVDSYTTESNEDTFEPDTVFESFHHQARVPISNRALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAYGRSIALLPAMVAG
Ga0209370_1117548	Ga0209370_11175482	F076265	MSDVPDPPPDRAESRAIELLRLVGSQTPSISSRFNTEVVARARAQRAFAVPLRALGGVVAAMAEALTSLIGIRGNR
Ga0209370_1126038	Ga0209370_11260381	F044772	MGLALHELHEVSGLSTGDIPYEEYVPTAVELRYVKEEFPLIYETYWEVLCHFHICGQITKWRSQGVKQLSWASYLFNNVNTKDHRITRLDPSSDREIEDRIDQAPNSFYTTESNEDGFDPDLVFESFHHQARTPISDRALLAGFLML
Ga0209370_1144629	Ga0209370_11446292	F002466	PEGSEPFDVTLPDGYEPGAHQAEFEAAAKQAGWTIERDGPTIIVRDVWTENEDHAAWLVATKAGLPLERVTVWAGRSA
Ga0209370_1145578	Ga0209370_11455781	F046122	DEEGEWIINDDISFDYPASIESIKSIMDGSLRMPVHEPSSAITSVEVIEGATLVIPPSKQGQSPIIFGRARPGRFSTTDSSSDSEVPQFFHYAPSARHIMKKMGYNLKQGAGLNFGKGRRGLMRNSVPRGKPANYYDSTRRGLGYVTPTSSTTVPVKGDGSIPSQSTSSSE