Scaffold Ga0208324_1005426

Overview

Basic Information

• Taxon OID: 3300027604
• Scaffold ID: Ga0208324_1005426
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4439
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F025325	Metagenome / Metatranscriptome	202	Y
F058360	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208324_10054265	F025325	AGGAGG	MVSDGPKKRLETNWEELVAAASMETDPEKLATMLEEIFAALEERERTLSLRHNPPGF
Ga0208324_10054267	F003832	N/A	MMKSTAKQLDTAANWPPQEGQLISLKSSAASETATLKEVRWGLVWRDFILEDGRVIPEHRISGCPLPQAWRKISEVTDQEREECEERLLSMAGAGMDPRKRDQSFWAELNQYLAYTYLRFKPAGSKVQDQDKE
Ga0208324_10054268	F058360	N/A	YNAVTLVWIGYLKQQPQLVPKVEAATNANTRGLALSTVPAVSDPDASFMLRVEQAVDRVLSRSDWPRPAAQGSRIVSRKPNPEESN