NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1000747

Scaffold Ga0208966_1000747


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1000747 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10227
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007263Metagenome / Metatranscriptome354Y
F017133Metagenome / Metatranscriptome242Y
F026557Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100074715F017133GAGMFAKVSHYPKGMMNLCPCGQVVLAPALYHEGESYMTNPNKCKDLFKGVNK
Ga0208966_100074720F026557AGGMINSVMTIPCEECHATGLIFFGDEDNFDVETCVCDFGMEQDLNLFNTPEAN
Ga0208966_100074725F007263AGGMINTYIDETDFYLIEDEQRYCCDELQFKYVCKAHGESMGCYFCEFDYSTTCEEQH

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