Scaffold Ga0208966_1000739

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1000739
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10274
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F037227	Metagenome / Metatranscriptome	168	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100073912	F002060	AGG	MNQSSLIIAICAAMLSGMGTAIIAGFRDNVKEKRRQVERDQDHLRLEVKDLKIELYKIDRELTEWKDKYYNAIQELILVKAELENTLSELDHIQHHSESLDTEFLI
Ga0208966_100073918	F037227	AGGAG	MPNDKQTVLEGIVEDVGIELYQKVWNAISKEDQTEESSKALAINSRDTAVFVIQRFMDKFNDAAEELKDK
Ga0208966_100073923	F073565	AGGAG	MSDGKDLTGFNDVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK
Ga0208966_10007395	F003582	N/A	MNVYKVKLEVEVEIEAFNEDDALDYSSDIFGVDDEIKNVKVVSVKEK
Ga0208966_10007399	F000473	AGG	MFIDKSAEKQAEHFKYGINHWNGEPMKPVFYTKEMAQKVREIKKPVPDLLMDIVLYPDFLTIRLYEDNFVMYDGIKKEMVINYVTKVKKLLESYGVRCELEGQPSRGIL