NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1000070

Scaffold Ga0208966_1000070


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1000070 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30756
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (74.58%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000852Metagenome / Metatranscriptome860Y
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F002387Metagenome / Metatranscriptome565Y
F013184Metagenome / Metatranscriptome273Y
F050154Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100007046F000980N/AVDACIILDMTKYQKYTWVCTSDCDALIEYTFKDGYGWPAGVMDLTCRCGTACTLLSVEDATIPYTDTPLTKEETMEESTPAVTVPDTYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKHNNVLQGKIDAAKEIICEAYADSDDQETLRAIAEALSIELIREFEFTASIEVSGTYSYNILENDYDLDLESEVTDALFADSQNGNIEITDQEVCNVSER
Ga0208966_100007048F001043N/ALKVIHQTTSQQDTQGDKMSDYRDGFDDGYKFAREEIIEKLSEIDIADIDSWILDRLSEMMEGGSL
Ga0208966_100007052F002387GAGGMASFLEDVNQMVIDAVYSDISEQLLESWINSNLDEGQYYADKQFAWMSDDKFIQSEFNKFYNLTEIDEDYFE
Ga0208966_100007053F013184N/AMRITLNNYNFVIKLAGSVMANNEKEAHEKINLHLDDLGEVDSTRYDLGWPDVSWDMEYDL
Ga0208966_100007055F050154GGAGMKLHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNNSNERV
Ga0208966_100007058F000852N/ALKGDYQMTTKREYLKSQGITVGVRGRFSGAAKVALAEATAKGITFTSEAPVKKAK
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