Scaffold Ga0208966

Basic Information
Taxon OID	3300027586 Open in IMG/M
Scaffold ID	Ga0208966_1000036 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027586 Open in IMG/M

Scaffold ID

Ga0208966_1000036 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38973
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (78.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

38973

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (78.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F021109	Metagenome	220	Y
F026557	Metagenome / Metatranscriptome	197	Y
F030990	Metagenome / Metatranscriptome	183	Y
F070856	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100003623	F070856	N/A	MAVYRNPNETSLDPQPVATPVSTYNVGNIPPLVNWTCVIGDSASFRIYVEDDLGDPLDYDTTSAGDTEGWDISGEFRRYSDNTGDDLLFTIYPDQTEFDEEGEFTVTLTSAQSKILRTGDVFDIQLRDGATRVWTVCQGEMIMIGEVTEQDTVS
Ga0208966_100003628	F030990	N/A	MPDVVLSNDDLTVLAGPSTVELLVDIGPTGTRGSKFFVGVGNPNSVTLSTKILNDLYINSAPGSDYGYLYQYVSEPGGDTWVEVLKLNPTIYSKLHTVNFVSGTSAYAGGGSVVIPITNISTASGLTAANFNVQYSIQNTKPLASSLSSVTVSGTNLVINLEASEYDGTWGAFDAEVSVHIFVSVMI
Ga0208966_100003639	F021109	AGG	MNTLNRIQAEQAIARHEAHEKAMAKSPWIRESVNAYRNATPEQIAEVEALIAKRAGK
Ga0208966_100003646	F026557	AGGA	MINSVMTIPCEECHSTGLIFFGEGDTYDVETCVCDFGMEQDLNLFNTPEAN
Ga0208966_100003649	F006385	GAG	MILDTETLIAIVIALGGSLSMMLVFWKQNTEQQREIRRLQIALRDERNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208966_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences