NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1000036

Scaffold Ga0208966_1000036


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1000036 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38973
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (78.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006385Metagenome / Metatranscriptome374Y
F021109Metagenome220Y
F026557Metagenome / Metatranscriptome197Y
F030990Metagenome / Metatranscriptome183Y
F070856Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100003623F070856N/AMAVYRNPNETSLDPQPVATPVSTYNVGNIPPLVNWTCVIGDSASFRIYVEDDLGDPLDYDTTSAGDTEGWDISGEFRRYSDNTGDDLLFTIYPDQTEFDEEGEFTVTLTSAQSKILRTGDVFDIQLRDGATRVWTVCQGEMIMIGEVTEQDTVS
Ga0208966_100003628F030990N/AMPDVVLSNDDLTVLAGPSTVELLVDIGPTGTRGSKFFVGVGNPNSVTLSTKILNDLYINSAPGSDYGYLYQYVSEPGGDTWVEVLKLNPTIYSKLHTVNFVSGTSAYAGGGSVVIPITNISTASGLTAANFNVQYSIQNTKPLASSLSSVTVSGTNLVINLEASEYDGTWGAFDAEVSVHIFVSVMI
Ga0208966_100003639F021109AGGMNTLNRIQAEQAIARHEAHEKAMAKSPWIRESVNAYRNATPEQIAEVEALIAKRAGK
Ga0208966_100003646F026557AGGAMINSVMTIPCEECHSTGLIFFGEGDTYDVETCVCDFGMEQDLNLFNTPEAN
Ga0208966_100003649F006385GAGMILDTETLIAIVIALGGSLSMMLVFWKQNTEQQREIRRLQIALRDERNK

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