Scaffold Ga0209527_1002293

Overview

Basic Information

• Taxon OID: 3300027583
• Scaffold ID: Ga0209527_1002293
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3838
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045878	Metagenome / Metatranscriptome	152	Y
F097751	Metagenome / Metatranscriptome	104	Y
F105673	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209527_10022931	F105673	AGGAG	MKWMWLESGRHGYWNIKGWGHFVVYFRLNRLHFLRFARYHFEQTV
Ga0209527_10022932	F045878	AGCAG	MSTQKHYRRCLERLAADPPKRRVTLIRTLLPEIEAAVTSGQNLKDIWEALQREGLEVSYHTFYMVVWRARKKPTAASSRGKKSKPSGAEALAKKQVETVEERDPLANLKLLEENRPGFHWRAATSLNALVHGTEDSNDKNKR
Ga0209527_10022935	F097751	AGG	MRYFLAMLFYVDYKCTTQPGFRKTFLVLTLIFVILLWSPWRPLLCPVFGVCPARVVLVHSVLQPQAQPRRVNLPKRIAPTQARVQIRAESPVQAGLRP