Scaffold Ga0209651_1047482

Overview

Basic Information

• Taxon OID: 3300027581
• Scaffold ID: Ga0209651_1047482
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001781	Metagenome / Metatranscriptome	635	Y
F007468	Metagenome / Metatranscriptome	350	Y
F059952	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209651_10474821	F001781	AGGAG	MKPADKDKLNECLKILDTTDLGLSLIWLWTWSTINNIFEDETYRQNCTIDEMWDHLCEAVEAGQGFSLEYGAEQHNEDVLDWMTSRDYIVDTMFEEEEEDEE
Ga0209651_10474824	F007468	GGAGG	LTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNDDLQGKGY
Ga0209651_10474826	F059952	N/A	INNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYDIKEGDEGYLC