Scaffold Ga0208454_1000459

Overview

Basic Information

• Taxon OID: 3300027573
• Scaffold ID: Ga0208454_1000459
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23515
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8898
  • Long. (^o): -106.9077
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013841	Metagenome	268	Y
F046265	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208454_10004594	F046265	AGG	MKISVIPWHVFIDALLKQQPNTLESWLRRWLFTNEGVIMADERIATNN
Ga0208454_10004595	F013841	AGGAG	MKLLLATMFKKVPVRRTNQRATICKRCGTRIYSLSFLKVHLESHARNSH