Scaffold Ga0209552_1000209

Overview

Basic Information

• Taxon OID: 3300027563
• Scaffold ID: Ga0209552_1000209
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18535
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (75.00%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F003690	Metagenome / Metatranscriptome	473	Y
F007263	Metagenome / Metatranscriptome	354	Y
F007644	Metagenome / Metatranscriptome	347	Y
F015208	Metagenome / Metatranscriptome	256	Y
F031497	Metagenome / Metatranscriptome	182	Y
F038246	Metagenome	166	Y
F051117	Metagenome / Metatranscriptome	144	Y
F097310	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_100020911	F015208	GGA	MYKITVANDSEPLHFVKEYSDELEAHTEFAKFIDWGFADEYSTVNLYTPSGKCYTKLFYREGRKVVVK
Ga0209552_100020921	F000980	N/A	VGECIILVMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTACTLLSVEDATIPYTDTPLTKEEPMETETPAVTIPESYNSNLLVTYKVIHGYSDAEYTTDKVTSIEWDLHNARQTQKANAVLHSKIDTVKDIITEAYADSDDQETLRAIAEALSIELIREFEFTASIEVSGTYSYNILENDYDLDLESEVTDALFADSQNGNIEITDQEVCNVSER
Ga0209552_100020922	F000311	GAG	MYFELTAPNRLSLEMAYWDAQITGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDREATGYKEK
Ga0209552_100020923	F001043	AGGAG	MSDYKDGFQDGYKFAREELMEKLAEIDIADIDSWILDRLSEMIEGGNL
Ga0209552_100020925	F001125	AGGCGG	MGDRANFGFRDSKENIVFLYGHWAGHRMLEQLADAVAAAEPRWQDESYATRIAISNLIKDEWASETGWGIYVNQLGDNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV
Ga0209552_10002093	F003690	GGA	MITDGLELLVNDYGLEFDSFLGSIYLPWHTIIITALALIAYKIYKRKKNK
Ga0209552_100020931	F007644	GAG	MKIHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNDDLQGKGY
Ga0209552_100020932	F000263	AGG	MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGARTL
Ga0209552_100020934	F000441	AGAAG	MSDNYLNDQLNTAQKLLWGGSETENIEAHNIIAKLINDRIEQADLS
Ga0209552_100020936	F031497	AGGCGG	MSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRVMEMIVSVIAEQAKMYDVYSNQGTYTEGLMLANELNECIKAYQESNQLNNLKLPSRSYKVKREEPKERTYQFGWREEKDPFSQP
Ga0209552_100020939	F051117	N/A	MSDALCTKYGCDYQLDLDGQITCANCGAMDDDMLPRRTYNEPELNESGYGYDELKDFDEYKDNNKNKITPFLGPNR
Ga0209552_100020942	F038246	AGG	MGILDNLEAYLEVTESTETCYYCQAVATYNDLAKVEKDSYKIVGVCACHSFKGLSS
Ga0209552_10002097	F007263	AGG	MNSVIDQTEFYTIHEPTFMCCDESQFRYVCKSHGESMGCYFCEFDYSNDCEEQH
Ga0209552_10002099	F097310	GGAG	MSKMKELLDEILNCDLCNGKGWVFFGNATEYDVEACECNPNELEVNY