NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207981_1019775

Scaffold Ga0207981_1019775


Overview

Basic Information
Taxon OID3300027560 Open in IMG/M
Scaffold IDGa0207981_1019775 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1213
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064822Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0207981_10197754F064822GAGGMGSSPQLVTAQYLEEECRMAGKHVRVVQLAGDDTYERIWELVKVGAVVTVEFVRDGHQRMLATTTIVDDHGVTVDKTAVEI

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