Scaffold Ga0208984_1014606

Overview

Basic Information

• Taxon OID: 3300027546
• Scaffold ID: Ga0208984_1014606
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1541
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016853	Metagenome / Metatranscriptome	244	Y
F017697	Metagenome / Metatranscriptome	239	Y
F085532	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208984_10146062	F085532	GGAG	MMSALRHVLLFLVALMLTGCPGPNYAPYDNMNNNSPG
Ga0208984_10146064	F016853	AGG	MSEEQSRVGEYLSRAASLRALAGETRYPEVRARLLGLAASFERLAYQVAKWKTARHDAAA
Ga0208984_10146065	F017697	N/A	MTCSRTLSEKLALSILAREGISAIWQLHLAAADAHRTGHPIAAASIVEIADAAEDAWLRAEGVREVAV