Scaffold Ga0209419_1007961

Overview

Basic Information

• Taxon OID: 3300027537
• Scaffold ID: Ga0209419_1007961
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1732
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F052404	Metagenome / Metatranscriptome	142	Y
F083762	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209419_10079613	F052404	GGAG	MADGQSFLDNLKNLRLVLSVALEHVQANRNQFVKDATGTQVRHFERSITQIRILAEQLEREFNTLEYLIAKRPHNPVN
Ga0209419_10079614	F000232	N/A	MKRPKQSDRVPPTPSALAVPSYHRILVKHGLIEKTLSIPDAYKVFMKVGADPEVQKLRRKVEHGSKIKHVPALYLATAMALQGMTKPELEALKLRIEKKAAIS
Ga0209419_10079615	F083762	N/A	LFVSRGRYSGTLVTVGSYAITVLMSEKRMKGRWVVYERRNGEFIFLSRLFTTRALAEKERDKLEATFTYKKVSLGVGAIAKK