Scaffold Ga0209384_1043108

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1043108
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1255
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045364	Metagenome	153	Y
F090886	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_10431081	F090886	AGGTGG	MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMPLG
Ga0209384_10431082	F045364	AGGA	MKQKINPFTGKQEYRCNYQEAADHVFMTVGELKYRYTDACTMHESSIPKRTYLHGIAGFWLSDLEHYKNNNIGLVKVYKKKVAEKIATAEVIDLSKKKRS