Scaffold Ga0209384_1029181

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1029181
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1647
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010948	Metagenome / Metatranscriptome	297	Y
F065109	Metagenome	128	Y
F083256	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_10291812	F065109	N/A	MSDKKNKWIWDKTKIVLKDPQGEKVILSSLNLNDETMNYIFKDIEEYVQKQNGKLE
Ga0209384_10291814	F010948	GGAGG	MEWILLGTCIIIIVVGLKFARSTQDYIDEQNERYRNDK
Ga0209384_10291817	F083256	N/A	NNQKTRKHRKEEIMKKMDSKNIDVIINKMKKMLNEKELGVKVNFGGARYDADSFKITLEVSLPNARTKEEKNLESLMRMRNANPKYYRDWDLTKIVKIKNVDHSLNGYTNRPNSKKPFIILNLLNNKKYLITEEQVDRLFGDPTWVDTLNFNSTEKGVSNEL