Scaffold Ga0209384_1023349

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1023349
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1929
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067117	Metagenome	126	N
F080239	Metagenome	115	N
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_10233491	F092711	GGAG	MVQLEITLTGRSKSFTSDTLQDCAKQFFDEFGEASKEVVKCQTFEVNNPTEFLIVGGNESCIG
Ga0209384_10233495	F067117	N/A	MNTKNKEKMKMLQIPVTEKQFNTLKEKADKEKRSLPNSILIVLEPHMKTK
Ga0209384_10233496	F080239	GGA	MTLNIKRMMMEQILNKFYVNRIVGEVFSSLNLENTPSLKDFIVNKSKTVYKNLCGVINPPILDRWNWLVVIPQQFNRYANPCNLLTVLVPPVFIIKNYLLLIKNNIKKSLIIKKEKYEH