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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027522 Open in IMG/M |
| Scaffold ID | Ga0209384_1002561 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8328 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (8.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
| Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016739 | Metagenome / Metatranscriptome | 245 | Y |
| F042579 | Metagenome | 158 | N |
| F044160 | Metagenome | 155 | N |
| F096053 | Metagenome | 105 | N |
| F096079 | Metagenome | 105 | Y |
| F098083 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209384_10025611 | F098083 | N/A | MKNYWIGFWVKLLSFVLTGYFVGTGSYSNAALCFMLYIGELAQSIADNIENKEL |
| Ga0209384_100256118 | F096053 | N/A | MIGKKNSGFFKQDAVMGKLSADARRPHQVNAIVAQALEEGRRRKAYVEERAKNQVPRFVK |
| Ga0209384_100256119 | F096079 | N/A | MYESAKFIKLTRAGGHGEIVVNLHHIVKMKARYENGKGAIIWLANGVGISGYDMYEVVEDLDLIMQYLSVKNNL |
| Ga0209384_10025614 | F042579 | N/A | MKKFNEFEKVLIIEALNYYVANLEVEIEAANKGDRNTIIAPGFYTMAKNELIGKVESLTKKFK |
| Ga0209384_10025615 | F044160 | N/A | MIKFWTLMSGTSYIASISNPSYTSNPKLAVKYESIKKADIAANEWKRKYGLPVMVHVIECINYKYEDQAHQAFYGENL |
| Ga0209384_10025617 | F016739 | N/A | MRLNGGLLSEGTSEWLRIRQAWKKWNASCHPDDQIDWNEFLDEHLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |