NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098083

Metagenome Family F098083

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098083
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 51 residues
Representative Sequence MKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKEL
Number of Associated Samples 85
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.92 %
% of genes near scaffold ends (potentially truncated) 36.54 %
% of genes from short scaffolds (< 2000 bps) 84.62 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.923 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(26.923 % of family members)
Environment Ontology (ENVO) Unclassified
(87.500 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.308 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.
1DelMOSpr2010_100789401
2DelMOWin2010_100415197
3BBAY94_101113192
4JGI20156J14371_100831751
5JGI24006J15134_1002058910
6JGI24006J15134_101350123
7JGI24006J15134_101847151
8JGI24003J15210_100303823
9JGI24003J15210_101146662
10GOS2243_10498373
11Ga0073579_10614942
12Ga0075478_1001009410
13Ga0075466_10122302
14Ga0075466_10233445
15Ga0075441_100013326
16Ga0098038_10832113
17Ga0098042_10731261
18Ga0098048_10082071
19Ga0075476_100307818
20Ga0098051_10153288
21Ga0075460_100351101
22Ga0075480_100738597
23Ga0075480_104241173
24Ga0115566_107361201
25Ga0115552_14502191
26Ga0114994_106206581
27Ga0115545_13255592
28Ga0115546_12809541
29Ga0115556_12312241
30Ga0115568_100927941
31Ga0115003_100956005
32Ga0163110_104255201
33Ga0163179_101974731
34Ga0180120_100335787
35Ga0180120_103264521
36Ga0181372_10049211
37Ga0181377_10286083
38Ga0181369_10274293
39Ga0181387_10509512
40Ga0181403_10264561
41Ga0181403_10705981
42Ga0181403_10751012
43Ga0181403_11260521
44Ga0181391_10842031
45Ga0181412_10348931
46Ga0181404_10219442
47Ga0181390_11520482
48Ga0181388_10136831
49Ga0181419_10261981
50Ga0181419_10524115
51Ga0181396_11000382
52Ga0181396_11044332
53Ga0181418_10873841
54Ga0181421_10691061
55Ga0181399_10819211
56Ga0181389_10499913
57Ga0181393_10468335
58Ga0181405_11642972
59Ga0187219_11103073
60Ga0181407_10702171
61Ga0181407_11261102
62Ga0181410_10670151
63Ga0181430_10830851
64Ga0181430_12322051
65Ga0181394_10404551
66Ga0181394_10773834
67Ga0206131_102418323
68Ga0206131_102594241
69Ga0211667_10213845
70Ga0211636_101907001
71Ga0211659_101342353
72Ga0211576_103649081
73Ga0211577_104318121
74Ga0213862_100657344
75Ga0206123_102448912
76Ga0222717_101765655
77Ga0212024_10887531
78Ga0212021_10911871
79Ga0233432_103873531
80Ga0233412_100658863
81Ga0228663_10949102
82Ga0208667_10295861
83Ga0208791_10735851
84Ga0208669_10844152
85Ga0209535_101461813
86Ga0209535_11363043
87Ga0209337_12398861
88Ga0208148_11000051
89Ga0208149_10165591
90Ga0208643_11740952
91Ga0208899_10242934
92Ga0208425_10130188
93Ga0208425_10168203
94Ga0209193_10524303
95Ga0208542_10885554
96Ga0228647_10256435
97Ga0209384_10025611
98Ga0209711_103135631
99Ga0233414_100691714
100Ga0257114_10912311
101Ga0307488_102406821
102Ga0307488_103616642
103Ga0307488_103672741
104Ga0302132_101476265
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 59.26%    β-sheet: 0.00%    Coil/Unstructured: 40.74%
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5101520253035404550MKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKELSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.72
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Structural matches with SCOPe domains



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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
23.1%76.9%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Marine
Surface Seawater
Marine
Seawater
Aqueous
Seawater
Sackhole Brine
Freshwater To Marine Saline Gradient
Marine
Marine
Estuarine Water
Pelagic Marine
Seawater
Pelagic Marine
Marine
Seawater
Macroalgal Surface
21.2%2.9%15.4%2.9%2.9%6.7%6.7%2.9%26.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1007894013300000116MarineMKIWIGFLVKLTSFILTGYYVSTGNYEGAALFFMVYLGELCGSICESIENKKL*
DelMOWin2010_1004151973300000117MarineMIHFWVKLLSFILTGYFVSVGNWESAALFFMVYLGELCGSICESIENKEL*
BBAY94_1011131923300000949Macroalgal SurfaceMINFWVKLISFILTGVFVGMGNWESAALFFMLYLGELSQSVAQSICETIENKQS*
JGI20156J14371_1008317513300001347Pelagic MarineMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELSGSICEAIENKEL*
JGI24006J15134_10020589103300001450MarineMKSWIGFLVKLTSFILTGYYVSTGDWEGAALFFMVYLGELCGSICETIENKEL*
JGI24006J15134_1013501233300001450MarineSLGFWIKMTSFILTGYFVSTGSWSSAALFFMVYLGELGQSIADTIENIQL*
JGI24006J15134_1018471513300001450MarineMKSWIGFLVKLTSFILTGYFVSTGNWESAALFFMVYLGELCGSICESIENIES*
JGI24003J15210_1003038233300001460MarineMKSLGFWIKMTSFILTGYFVSTGSWSSAALFFMVYLGELGQSIADTIENIQL*
JGI24003J15210_1011466623300001460MarineMIHFWVKLISFILTGYYVSTGDWEGAALFFMVYLGELCGSICETIENKEL*
GOS2243_104983733300001965MarineMKSLGFWIKLTSFILTGYFVQTGDWASAALFFMVYIGELCGSICESIENKEL*
Ga0073579_106149423300005239MarineMTHFWVKLLSFILTGVFVGMGNWESAALFFMVYLGELSGSICEAIENKDYEL*
Ga0075478_10010094103300006026AqueousMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKES*
Ga0075466_101223023300006029AqueousMIHFWVKLLSFILTGVFVGMGNWESAALFFMVYLGELCGSICETIENKEL*
Ga0075466_102334453300006029AqueousMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKEL*
Ga0075441_1000133263300006164MarineMKNYWIGFWVKLLSFVLTGYFVGTGSYSNAALCFMLYIGELAQSIADNIENKEL*
Ga0098038_108321133300006735MarineMKNLGFWVKIVSFILTGYYVYTCNYTAAALWFMLYLGELAQSIGDVIENKEL*
Ga0098042_107312613300006749MarineMKSLGFWIKLTSFILTGYFVQTGDWGSAVLFFMVYIGELCGTICEYI
Ga0098048_100820713300006752MarineMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKEL*
Ga0075476_1003078183300006867AqueousLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKES*
Ga0098051_101532883300006924MarineMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGEL*
Ga0075460_1003511013300007234AqueousMIHFWVKLLSFILTGVFVGMGNWESAALFFMVYLGELCGSICESIENKEL*
Ga0075480_1007385973300008012AqueousWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKES*
Ga0075480_1042411733300008012AqueousWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKEL*
Ga0115566_1073612013300009071Pelagic MarineMIHFWVKLLSFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKEL*
Ga0115552_145021913300009077Pelagic MarineMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKES*
Ga0114994_1062065813300009420MarineMKNYWIGFWVKLLSFILTGYYVSTGNWEGAAVFFMLYLGELCGSICEAIENEKS*
Ga0115545_132555923300009433Pelagic MarineMKSWIGFLIKLTSFICTGYYVSTGNWEGAALFFMVYLGELCGSICESIENKEL*
Ga0115546_128095413300009435Pelagic MarineMKSWIGFLVKLTSFIMTGYYVSTGNWEGAVLFFMLYLGELCGSICEAIENKES*
Ga0115556_123122413300009437Pelagic MarineMKSWISFLVKLTSFLLTGYYVSTGNWEGAALFFMLYLGELSGSICEAIENKEL*
Ga0115568_1009279413300009498Pelagic MarineKLEVMKSWIGFLIKLTSFILTGYYVSTGNWEGAALFFMLYLGELSGSICEAIENKEL*
Ga0115003_1009560053300009512MarineMKNYWIGFWVKLLSFILTGYYVSTGNWEGAAVFFMLYLGELCGSICVSIENKKS*
Ga0163110_1042552013300012928Surface SeawaterMKNLGFWVKIVSFILTGYYVYTCNYTAAALWFMLYLGELAQSIGDVIENKE*
Ga0163179_1019747313300012953SeawaterMIHFWVKLLSFILTGVFVGMGNWESAALFFMLYLGELCGSICETIENKEL*
Ga0180120_1003357873300017697Freshwater To Marine Saline GradientMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKES
Ga0180120_1032645213300017697Freshwater To Marine Saline GradientMKNYWIGFWVKLLSFILTGYYVSTGNWEGAAVFFMLYLGELCGSICESIENKES
Ga0181372_100492113300017705MarineMIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKEL
Ga0181377_102860833300017706MarineMIHFWVKLLSFILTGVFVGMGNWESAALFFMLYLGELCGSICETIENKEL
Ga0181369_102742933300017708MarineMKNLGFWVKIVSFILTGYYVYTCNYTAAALWFMLYLGELAQSIGDVIENKEL
Ga0181387_105095123300017709SeawaterMIHFWVKLLSFILTGVFVGMGNWESAALFFMLYLGELCGSICESIENKEV
Ga0181403_102645613300017710SeawaterHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKES
Ga0181403_107059813300017710SeawaterMIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICE
Ga0181403_107510123300017710SeawaterMKSWIGFLVKLTSFIMTAYYVSTGDWEGAVLFFMLYLGELCGSICETIENKEL
Ga0181403_112605213300017710SeawaterMIHFWVKLISFILTGVFVGMGNWESAALFFMLYLGELCGSICESIENKEV
Ga0181391_108420313300017713SeawaterICYIINIKLEVMIHFWVKLLSFILTGVFVGMGNWESAALFFMLYLGELCGSICESIENKE
Ga0181412_103489313300017714SeawaterMKSWIGFLVKLTSFIMTAYYVSTGDWEGAVLFFMLYLGELCGSICEAIENKES
Ga0181404_102194423300017717SeawaterMKSWIGFLVKLTSFIMTGYYVSTGNWEGAVLFFMLYLGELCGSICEAIENKES
Ga0181390_115204823300017719SeawaterLEVMIHFWVKLLAFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKEL
Ga0181388_101368313300017724SeawaterKEICYIINIKLEVMIHFWVKLLAFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKEL
Ga0181419_102619813300017728SeawaterMIHFWVKLLSYILTGVFVGMGNWESAALFFMLYLGELCGSICESIENKEV
Ga0181419_105241153300017728SeawaterSWIGFLVKLTSFIMTAYYVSTGDWEGAVLFFMLYLGELCGSICEAIENKES
Ga0181396_110003823300017729SeawaterCYIINIKLEVMIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKES
Ga0181396_110443323300017729SeawaterMKSLSFWVKLISFILTGYCMSTGSYASAVLWFMIYLGELCGSICESVENIES
Ga0181418_108738413300017740SeawaterEICYIINIKLEVMIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKES
Ga0181421_106910613300017741SeawaterMKSWIGFLVKLTSFIMTAYYVSTGDWEGAVLFFMVYLGELCGSICEAIENKES
Ga0181399_108192113300017742SeawaterMIHFWVKLLSFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKES
Ga0181389_104999133300017746SeawaterFWVKLLAFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKES
Ga0181393_104683353300017748SeawaterIINIKLEVMIHFWVKLLAFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKES
Ga0181405_116429723300017750SeawaterILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKES
Ga0187219_111030733300017751SeawaterFILTGYYVSTGNWEGAALFFMLYLGELCGSICESIENKEV
Ga0181407_107021713300017753SeawaterMKSLSFWVKLISFILTGYCMSTGSYASAVLWFMIYLGELCGSICESIENIEV
Ga0181407_112611023300017753SeawaterMKSWIGFLVKLTSFIMTAYYVSTGDWEGAVLFFMVYLGELCGSICETIENKEL
Ga0181410_106701513300017763SeawaterAFILTGYYVSTGNWEGAALFFMLYLGELCGSICESIENKEV
Ga0181430_108308513300017772SeawaterEVMKSWIGFLVKLTSFIMTAYYVSTGDWEGAVLFFMLYLGELCGSICETIENKEL
Ga0181430_123220513300017772SeawaterINIKLEVMKSWIGFLVKLTSFIMTAYYVSTGDWEGAVLFFMLYLGELCGSICEAIENKES
Ga0181394_104045513300017776SeawaterICYIINIKLEVMKSWIGFLVKLTSFIMTGYYVSTGNWEGAVLFFMLYLGELCGSICEAIENKES
Ga0181394_107738343300017776SeawaterMKSLSFWVKLISFILTGYCMSTGSYASAVLWFMIYLGELCGSICEAIENKES
Ga0206131_1024183233300020185SeawaterILTGYYVSTGNWEGAALFFMLYLGELSGSICEAIENKEL
Ga0206131_1025942413300020185SeawaterMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELS
Ga0211667_102138453300020282MarineMKSLGFWIKLTSFILTGYFVQTGDWASAALFFMVYLGELCGSICESIENKEL
Ga0211636_1019070013300020400MarineMKSWVGFLIKLTSFILTGYFVQTGDWASAALFFMVYIGELCGTICESIENKEL
Ga0211659_1013423533300020404MarineMIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICETIENKEL
Ga0211576_1036490813300020438MarineMIHFWVKLLAFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKES
Ga0211577_1043181213300020469MarineMIHFWVKLLAFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKEL
Ga0213862_1006573443300021347SeawaterMIHFWVKLLSFILTGYFVSVGNWESAALFFMVYLGELCGSICESIENKEL
Ga0206123_1024489123300021365SeawaterMKSWIGFLVKLTSFIMTGYYVSTGNWEGAVLFFMLYLGELCGSICETIENKES
Ga0222717_1017656553300021957Estuarine WaterCYIINIKLEVMKSLSFWVKLISFILTGYCMSTGSYASAVLWFMIYLGELCGSICESVENIES
Ga0212024_108875313300022065AqueousMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSI
Ga0212021_109118713300022068AqueousMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKES
(restricted) Ga0233432_1038735313300023109SeawaterMKSWIGFLVKLTSFILTGYYVSMGNWEGAALFFMLYLGELC
(restricted) Ga0233412_1006588633300023210SeawaterMKSWIGFLVKLTSFILTGYYVSMGNWEGAALFFMLYLGELCGSICEAIENTKS
Ga0228663_109491023300024508SeawaterIINIKLEVMIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKES
Ga0208667_102958613300025070MarineMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKEL
Ga0208791_107358513300025083MarineYIINIKLEVMKSWIGFLVKLTSFILTGYYVSTGNWEGAALFFMLYLGELCGSICETIENKEL
Ga0208669_108441523300025099MarineMISFWVKLLAFILTGYFVSTGNWASAALFFMLYLGELAQSIGDVIENKEL
Ga0209535_1014618133300025120MarineMIHFWVKLISFILTGYFVSTGSWSSAALFFMVYLGELCGSICETIENKEL
Ga0209535_113630433300025120MarineMKSLGFWIKMTSFILTGYFVSTGSWSSAALFFMVYLGELGQSIADTIENIQL
Ga0209337_123988613300025168MarineEVMKSLGFWIKMTSFILTGYFVSTGSWSSAALFFMVYLGELGQSIADTIENIQL
Ga0208148_110000513300025508AqueousMIHFWVKLLSFILTGVFVGMGNWESAALFFMVYLGELCGSICETIENKEL
Ga0208149_101655913300025610AqueousILTGVFVGMGNWESAALFFMVYLGELCGSICESIENKEL
Ga0208643_117409523300025645AqueousMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKEL
Ga0208899_102429343300025759AqueousMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGS
Ga0208425_101301883300025803AqueousCYIINIKLEVMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKES
Ga0208425_101682033300025803AqueousMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLY
Ga0209193_105243033300025816Pelagic MarineMKSWIGFLVKLTSFIMTGYYVSTGNWEGAVLFFMLYLGELCGSICESIENKEL
Ga0208542_108855543300025818AqueousKEICYIIYIKLEVMKSWIGFLIKLTSFILTGYFVSTGNWEGAALFFMLYLSELCGSICETIENKES
Ga0228647_102564353300026505SeawaterMIHFWVKLISFILTGVFVGMGNWESAALFFMVYLGELCGSICEAIENKES
Ga0209384_100256113300027522MarineMKNYWIGFWVKLLSFVLTGYFVGTGSYSNAALCFMLYIGELAQSIADNIENKEL
Ga0209711_1031356313300027788MarineMKNYWIGFWVKLLSFILTGYYVSTGNWEGAAVFFMLYLGELCGSICVAIENKKS
(restricted) Ga0233414_1006917143300028045SeawaterMKSWIGFLVKLTSFILTGYYVSMCNWEGAALFFMLYLGELCGSICEAIENTKS
Ga0257114_109123113300028196MarineMKSWIGFLVKLTSFIMTGYYVSTGNWEGAALFFMVYLGELCGSICEAIENTKS
Ga0307488_1024068213300031519Sackhole BrineIGFWVKLLSFILTGYYVSTGNWEGAAVFFMLYLGELCGSICVAIENKKS
Ga0307488_1036166423300031519Sackhole BrineMKSWIGFLVKLLSFILTGYYVSMGNWEGAALFFMLYLGELCGSICESIENTKS
Ga0307488_1036727413300031519Sackhole BrineIGFWVKLLSFILTGYYVSTGNWEGAAVFFMLYLGELCGSICVSIENTKS
Ga0302132_1014762653300031605MarineMKNYWIGFWVKLLSFILTGYYVSTGNWEGAAVFFMLYLGELCGSICVSIENTKS


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