Scaffold Ga0209537_1021187

Overview

Basic Information

• Taxon OID: 3300027510
• Scaffold ID: Ga0209537_1021187
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2975
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090570	Metagenome / Metatranscriptome	108	N
F103495	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_10211872	F103495	GGA	MDNLLQFLIDSGLLYMIISTLLTVGIGFIVGKGVSFKEIQDIISAVEESYKDGYISPDEARKIYEEIEDVIGHNWYIRLFNFIKR
Ga0209537_10211877	F090570	AGG	VNEFGNAYIEKVWCNSVKSPRPLKVIPYKKDFKVFFSVRGTEIGRITIGIFVDDILDQMLTTNILEKNKSLAIWFWYPYKRKQIGKHVIQFKIGEATDRTADSVTWKYTSDKYIVEVK