Scaffold Ga0209537_1000764

Overview

Basic Information

• Taxon OID: 3300027510
• Scaffold ID: Ga0209537_1000764
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38696
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (96.30%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F014634	Metagenome / Metatranscriptome	261	Y
F020859	Metagenome / Metatranscriptome	221	Y
F065565	Metagenome / Metatranscriptome	127	N
F075994	Metagenome / Metatranscriptome	118	N
F081238	Metagenome / Metatranscriptome	114	Y
F086520	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_100076414	F086520	GAGG	MCVPTVKVGTAMTKSRKDVVNKAFEQAAFEVEMRKREKERIRRKRYTPMTKAQFKYWVMRDLGLLEEYYDDFE
Ga0209537_10007642	F014634	AGGAGG	MKEKIEEIFDLERIREYAETNIDLTEWIEEEYGETRKILLIATLVEGAYGAYIPGMVLELFGRAEGYDLEDPYNYEKNETIHDALISLEIEVNECLNELMPAKGTYYMSYHEADGSYCLFYEEVEQV
Ga0209537_100076429	F075994	AGGAGG	MRLPKARITLDLDHDLLEWVMRKVQETKNSRNEVIGQIIRLAKESEENEASMDER
Ga0209537_10007643	F014003	AGGAGG	MQTVFNKAKVKSWIKKAYKNSLFGYGHGYITDGYAMLVDEPHMRPTILEVFGTLTPECKHSAEQFKRLMRLPNKPIKAIDSKLEFILKPKHRLRILYDPKTGKELAVKSMYFDLLNNPEACTFHTNELMSMLWIVYDNETVGVIAPYRLEDQLSHVKFKAEEEREQV
Ga0209537_100076431	F065565	AGGAGG	MSFLKVLNILVTAAGFIIPLALLLEAEELPGEEKKKAVLAQLKAQLDSLGLEFPQWLQKFIDPILGLLIDAVVFWLNKIGFFEHGGESSED
Ga0209537_10007645	F020859	AGGGGG	MEKIIAKEVNPAYVDFSLYFYDDSLKSVSGENCAVYIVPGDRERYGGFNMEEYREIEEKAKAIINGFRDVSAKWPYGYATYKEVMEDNAIPYTSHTCHLLKKWAEYAKPYDTGDIAEFLTITTGEKWEVKAFTGYSQGDYCEVVYCVNHYTPERITEIGELWLGCGTEFCIEGCYGYFVPESIRWREGETLRKYLADSYGCEPEELEIYLYEGEHIVTDYRKMD
Ga0209537_10007648	F081238	AGGAGG	MQKMAAKPFYADYVNRLMRWYCRAQEGGKEVNLERALDRENWEAVARVMERLDEEDKCAIMGVYCKRDTMADNVYLTAFELGWDQDKLWALVSRVTRKVAEERGLV