Scaffold Ga0209622_1000545

Overview

Basic Information

• Taxon OID: 3300027502
• Scaffold ID: Ga0209622_1000545
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4869
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000810	Metagenome / Metatranscriptome	882	Y
F054369	Metagenome / Metatranscriptome	140	Y
F090779	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209622_10005455	F000810	N/A	MLPSRLLQRSESFGRNLLAKPSLMVTISTMKSKHIFARNVLLMVFGCAMFISTIAQGGEGYLRSNHHYPPGRLTVDRIANFGWNLGFNLQIDGRPAGNIAQGHSYSTVLPAGPHVLTVQRVPANGYTVPTSTTVNIQPGADHLYVAMWDSDLVYLHPIGVSVTPGQYWQLHGDGTP
Ga0209622_10005456	F054369	AGGAG	MTQAERQQLIELGILTPDCGPSITYWKLSPELKREVRRRMKERERMTSGLLLTRILERLKRV
Ga0209622_10005457	F090779	AGGGGG	MTEKERQQLLIGLGIWKLELKPELGRKAKTRTLILGRRASRGLLSGILDRLKRPR