Scaffold Ga0208199_1000078

Overview

Basic Information

• Taxon OID: 3300027497
• Scaffold ID: Ga0208199_1000078
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38917
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (81.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006611	Metagenome / Metatranscriptome	369	Y
F009352	Metagenome / Metatranscriptome	319	Y
F035928	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208199_10000781	F006611	N/A	VIHRRGWTLVLNKDGTTTAWNPDRTKVLHSHGPHSPPARAG
Ga0208199_100007812	F009352	AGGTGG	MRAHHRTDRVLTEFELMLGALAPGARKALTAAMVALDQGARLYPPSRGRRFARLDDQAAEAYIRALVARGGVPAQLVQRLRGLVVMCYYELPAVQREIGYDPAPYIAAVSRRRLDSYGPDIAAGEAAVTARAEP
Ga0208199_100007827	F035928	GGAG	MPGDQYEPNRVLGIPWTRDPNARQGEEPQRVMGFPVDWFGRVDTGWLQSLAHPVRGYRRWLRRRRLGPYAVDEDDPGPR