Scaffold Ga0209694_1018226

Overview

Basic Information

• Taxon OID: 3300027374
• Scaffold ID: Ga0209694_1018226
• Source Dataset Name: Mouse cecum microbial communities from Vienna, Austria - Glucosamine amended microcosms incubated with D2O (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1899
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:440 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Mouse Cecum → Mouse Cecum Microbial Communities From Vienna, Austria

Source Dataset Sampling Location

• Location Name: Austria: Vienna
• Coordinates
  • Lat. (^o): 48.2
  • Long. (^o): 16.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209694_10182262	F013656	AGGA	LEKRYKEPNKLELETTINVLYEENVISIYTNKPNLQKQLCKSIGEPEKEFKKGKSILASRWCIPMSEKSKISKMMLKANIFEL