3300027374: Mouse cecum microbial communities from Vienna, Austria - Glucosamine amended microcosms incubated with D2O (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027374
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114692 | Gp0115681 | Ga0209694
• Sample Name: Mouse cecum microbial communities from Vienna, Austria - Glucosamine amended microcosms incubated with D2O (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 316814384
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:440	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mouse Cecum Microbial Communities From Vienna, Austria
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Mouse Cecum → Mouse Cecum Microbial Communities From Vienna, Austria

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Austria: Vienna
• Coordinates
  • Lat. (^o): 48.2
  • Long. (^o): 16.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209694_1018226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:440	1899

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209694_1018226	Ga0209694_10182262	F013656	LEKRYKEPNKLELETTINVLYEENVISIYTNKPNLQKQLCKSIGEPEKEFKKGKSILASRWCIPMSEKSKISKMMLKANIFEL